Public Types | List of all members
gtsam::DiscreteDistribution Class Reference

#include <DiscreteDistribution.h>

Inheritance diagram for gtsam::DiscreteDistribution:
Inheritance graph
[legend]

Public Types

using Base = DiscreteConditional
 
- Public Types inherited from gtsam::DiscreteConditional
typedef Conditional< BaseFactor, ThisBaseConditional
 Typedef to our conditional base class. More...
 
typedef DecisionTreeFactor BaseFactor
 Typedef to our factor base class. More...
 
typedef std::shared_ptr< Thisshared_ptr
 shared_ptr to this class More...
 
typedef DiscreteConditional This
 Typedef to this class. More...
 
using Values = DiscreteValues
 backwards compatibility More...
 
- Public Types inherited from gtsam::DecisionTreeFactor
typedef AlgebraicDecisionTree< KeyADT
 
typedef DiscreteFactor Base
 Typedef to base class. More...
 
typedef std::shared_ptr< DecisionTreeFactorshared_ptr
 
typedef DecisionTreeFactor This
 
- Public Types inherited from gtsam::DiscreteFactor
typedef Factor Base
 Our base class. More...
 
typedef std::shared_ptr< DiscreteFactorshared_ptr
 shared_ptr to this class More...
 
typedef DiscreteFactor This
 This class. More...
 
using Values = DiscreteValues
 backwards compatibility More...
 
using Names = DiscreteValues::Names
 Translation table from values to strings. More...
 
- Public Types inherited from gtsam::Factor
typedef KeyVector::const_iterator const_iterator
 Const iterator over keys. More...
 
typedef KeyVector::iterator iterator
 Iterator over keys. More...
 
- Public Types inherited from gtsam::AlgebraicDecisionTree< Key >
using Base = DecisionTree< Key, double >
 
- Public Types inherited from gtsam::DecisionTree< Key, double >
using Binary = std::function< double(const double &, const double &)>
 
using CompareFunc = std::function< bool(const double &, const double &)>
 
using LabelC = std::pair< Key, size_t >
 
using LabelFormatter = std::function< std::string(Key)>
 
using NodePtr = typename Node::Ptr
 
using Unary = std::function< double(const double &)>
 
using UnaryAssignment = std::function< double(const Assignment< Key > &, const double &)>
 
using ValueFormatter = std::function< std::string(double)>
 
- Public Types inherited from gtsam::Conditional< DecisionTreeFactor, DiscreteConditional >
typedef std::pair< typename DecisionTreeFactor ::const_iterator, typename DecisionTreeFactor ::const_iterator > ConstFactorRange
 
typedef ConstFactorRangeIterator Frontals
 
typedef ConstFactorRangeIterator Parents
 

Public Member Functions

Standard Constructors
 DiscreteDistribution ()
 Default constructor needed for serialization. More...
 
 DiscreteDistribution (const DecisionTreeFactor &f)
 Constructor from factor. More...
 
 DiscreteDistribution (const Signature &s)
 
 DiscreteDistribution (const DiscreteKey &key, const std::vector< double > &spec)
 
 DiscreteDistribution (const DiscreteKey &key, const std::string &spec)
 
Testable
void print (const std::string &s="Discrete Prior: ", const KeyFormatter &formatter=DefaultKeyFormatter) const override
 GTSAM-style print. More...
 
Standard interface
double operator() (size_t value) const
 Evaluate given a single value. More...
 
std::vector< double > pmf () const
 We also want to keep the Base version, taking DiscreteValues: More...
 
- Public Member Functions inherited from gtsam::DiscreteConditional
 DiscreteConditional ()
 Default constructor needed for serialization. More...
 
 DiscreteConditional (size_t nFrontals, const DecisionTreeFactor &f)
 Construct from factor, taking the first nFrontals keys as frontals. More...
 
 DiscreteConditional (size_t nFrontals, const DiscreteKeys &keys, const ADT &potentials)
 
 DiscreteConditional (const Signature &signature)
 
 DiscreteConditional (const DiscreteKey &key, const DiscreteKeys &parents, const Signature::Table &table)
 
 DiscreteConditional (const DiscreteKey &key, const DiscreteKeys &parents, const std::vector< double > &table)
 
 DiscreteConditional (const DiscreteKey &key, const DiscreteKeys &parents, const std::string &spec)
 
 DiscreteConditional (const DiscreteKey &key, const std::string &spec)
 No-parent specialization; can also use DiscreteDistribution. More...
 
 DiscreteConditional (const DecisionTreeFactor &joint, const DecisionTreeFactor &marginal)
 construct P(X|Y) = f(X,Y)/f(Y) from f(X,Y) and f(Y) Assumes but does not check that f(Y)=sum_X f(X,Y). More...
 
 DiscreteConditional (const DecisionTreeFactor &joint, const DecisionTreeFactor &marginal, const Ordering &orderedKeys)
 construct P(X|Y) = f(X,Y)/f(Y) from f(X,Y) and f(Y) Assumes but does not check that f(Y)=sum_X f(X,Y). Makes sure the keys are ordered as given. Does not check orderedKeys. More...
 
DiscreteConditional operator* (const DiscreteConditional &other) const
 Combine two conditionals, yielding a new conditional with the union of the frontal keys, ordered by gtsam::Key. More...
 
DiscreteConditional marginal (Key key) const
 
bool equals (const DiscreteFactor &other, double tol=1e-9) const override
 GTSAM-style equals. More...
 
double logProbability (const DiscreteValues &x) const
 Log-probability is just -error(x). More...
 
void printSignature (const std::string &s="Discrete Conditional: ", const KeyFormatter &formatter=DefaultKeyFormatter) const
 print index signature only More...
 
double evaluate (const DiscreteValues &values) const
 Evaluate, just look up in AlgebraicDecisionTree. More...
 
shared_ptr choose (const DiscreteValues &given) const
 < DiscreteValues version More...
 
DecisionTreeFactor::shared_ptr likelihood (const DiscreteValues &frontalValues) const
 
DecisionTreeFactor::shared_ptr likelihood (size_t frontal) const
 
size_t sample (const DiscreteValues &parentsValues) const
 
size_t sample (size_t parent_value) const
 Single parent version. More...
 
size_t sample () const
 Zero parent version. More...
 
size_t argmax (const DiscreteValues &parentsValues=DiscreteValues()) const
 Return assignment for single frontal variable that maximizes value. More...
 
double error (const DiscreteValues &values) const override
 Calculate error for DiscreteValues x, is -log(probability). More...
 
double error (const HybridValues &values) const override
 
void sampleInPlace (DiscreteValues *parentsValues) const
 sample in place, stores result in partial solution More...
 
std::vector< DiscreteValuesfrontalAssignments () const
 Return all assignments for frontal variables. More...
 
std::vector< DiscreteValuesallAssignments () const
 Return all assignments for frontal and parent variables. More...
 
std::string markdown (const KeyFormatter &keyFormatter=DefaultKeyFormatter, const Names &names={}) const override
 Render as markdown table. More...
 
std::string html (const KeyFormatter &keyFormatter=DefaultKeyFormatter, const Names &names={}) const override
 Render as html table. More...
 
double evaluate (const HybridValues &x) const override
 
double logProbability (const HybridValues &x) const override
 < HybridValues version More...
 
double negLogConstant () const override
 
- Public Member Functions inherited from gtsam::DecisionTreeFactor
 DecisionTreeFactor ()
 
 DecisionTreeFactor (const DiscreteKeys &keys, const ADT &potentials)
 
 DecisionTreeFactor (const DiscreteKeys &keys, const std::vector< double > &table)
 Constructor from doubles. More...
 
 DecisionTreeFactor (const DiscreteKeys &keys, const std::string &table)
 Constructor from string. More...
 
template<class SOURCE >
 DecisionTreeFactor (const DiscreteKey &key, SOURCE table)
 Single-key specialization. More...
 
 DecisionTreeFactor (const DiscreteKey &key, const std::vector< double > &row)
 Single-key specialization, with vector of doubles. More...
 
 DecisionTreeFactor (const DiscreteConditional &c)
 
DecisionTreeFactor apply (ADT::Unary op) const
 
DecisionTreeFactor apply (ADT::UnaryAssignment op) const
 
DecisionTreeFactor apply (const DecisionTreeFactor &f, ADT::Binary op) const
 
shared_ptr combine (size_t nrFrontals, ADT::Binary op) const
 
shared_ptr combine (const Ordering &keys, ADT::Binary op) const
 
std::vector< std::pair< DiscreteValues, double > > enumerate () const
 Enumerate all values into a map from values to double. More...
 
std::vector< double > probabilities () const
 Get all the probabilities in order of assignment values. More...
 
DecisionTreeFactor prune (size_t maxNrAssignments) const
 Prune the decision tree of discrete variables. More...
 
void dot (std::ostream &os, const KeyFormatter &keyFormatter=DefaultKeyFormatter, bool showZero=true) const
 
void dot (const std::string &name, const KeyFormatter &keyFormatter=DefaultKeyFormatter, bool showZero=true) const
 
std::string dot (const KeyFormatter &keyFormatter=DefaultKeyFormatter, bool showZero=true) const
 
double error (const HybridValues &values) const override
 
double evaluate (const Assignment< Key > &values) const
 
double operator() (const DiscreteValues &values) const override
 Evaluate probability distribution, sugar. More...
 
double error (const DiscreteValues &values) const override
 Calculate error for DiscreteValues x, is -log(probability). More...
 
DecisionTreeFactor operator* (const DecisionTreeFactor &f) const override
 multiply two factors More...
 
DecisionTreeFactor operator/ (const DecisionTreeFactor &f) const
 divide by factor f (safely) More...
 
DecisionTreeFactor toDecisionTreeFactor () const override
 Convert into a decision tree. More...
 
shared_ptr sum (size_t nrFrontals) const
 Create new factor by summing all values with the same separator values. More...
 
shared_ptr sum (const Ordering &keys) const
 Create new factor by summing all values with the same separator values. More...
 
shared_ptr max (size_t nrFrontals) const
 Create new factor by maximizing over all values with the same separator. More...
 
shared_ptr max (const Ordering &keys) const
 Create new factor by maximizing over all values with the same separator. More...
 
- Public Member Functions inherited from gtsam::DiscreteFactor
 DiscreteFactor ()
 
template<typename CONTAINER >
 DiscreteFactor (const CONTAINER &keys, const std::map< Key, size_t > cardinalities={})
 
void print (const std::string &s="DiscreteFactor\n", const KeyFormatter &formatter=DefaultKeyFormatter) const override
 print More...
 
DiscreteKeys discreteKeys () const
 Return all the discrete keys associated with this factor. More...
 
std::map< Key, size_tcardinalities () const
 
size_t cardinality (Key j) const
 
double error (const HybridValues &c) const override
 
virtual AlgebraicDecisionTree< KeyerrorTree () const
 Compute error for each assignment and return as a tree. More...
 
- Public Member Functions inherited from gtsam::Factor
virtual ~Factor ()=default
 Default destructor. More...
 
bool empty () const
 Whether the factor is empty (involves zero variables). More...
 
Key front () const
 First key. More...
 
Key back () const
 Last key. More...
 
const_iterator find (Key key) const
 find More...
 
const KeyVectorkeys () const
 Access the factor's involved variable keys. More...
 
const_iterator begin () const
 
const_iterator end () const
 
size_t size () const
 
virtual void printKeys (const std::string &s="Factor", const KeyFormatter &formatter=DefaultKeyFormatter) const
 print only keys More...
 
bool equals (const This &other, double tol=1e-9) const
 check equality More...
 
KeyVectorkeys ()
 
iterator begin ()
 
iterator end ()
 
- Public Member Functions inherited from gtsam::AlgebraicDecisionTree< Key >
 AlgebraicDecisionTree (const AlgebraicDecisionTree< M > &other, const std::map< M, Key > &map)
 
 AlgebraicDecisionTree (const Base &add)
 
 AlgebraicDecisionTree (const DecisionTree< Key, X > &other, Func f)
 Create from an arbitrary DecisionTree<L, X> by operating on it with a functional f. More...
 
 AlgebraicDecisionTree (const Key &label, double y1, double y2)
 
 AlgebraicDecisionTree (const std::vector< typename Base::LabelC > &labelCs, const std::string &table)
 Create from keys and string table. More...
 
 AlgebraicDecisionTree (const std::vector< typename Base::LabelC > &labelCs, const std::vector< double > &ys)
 Create from keys with cardinalities and a vector table. More...
 
 AlgebraicDecisionTree (const typename Base::LabelC &labelC, double y1, double y2)
 Create a new leaf function splitting on a variable. More...
 
 AlgebraicDecisionTree (double leaf=1.0)
 
 AlgebraicDecisionTree (Iterator begin, Iterator end, const Key &label)
 Create a range of decision trees, splitting on a single variable. More...
 
bool equals (const AlgebraicDecisionTree &other, double tol=1e-9) const
 Equality method customized to value type double. More...
 
double max () const
 Find the maximum values amongst all leaves. More...
 
double min () const
 Find the minimum values amongst all leaves. More...
 
AlgebraicDecisionTree normalize () const
 Helper method to perform normalization such that all leaves in the tree sum to 1. More...
 
AlgebraicDecisionTree operator* (const AlgebraicDecisionTree &g) const
 
AlgebraicDecisionTree operator+ (const AlgebraicDecisionTree &g) const
 
AlgebraicDecisionTree operator- () const
 
AlgebraicDecisionTree operator- (const AlgebraicDecisionTree &g) const
 
AlgebraicDecisionTree operator/ (const AlgebraicDecisionTree &g) const
 
void print (const std::string &s="", const typename Base::LabelFormatter &labelFormatter=&DefaultFormatter) const
 print method customized to value type double. More...
 
double sum () const
 Compute sum of all values. More...
 
AlgebraicDecisionTree sum (const Key &label, size_t cardinality) const
 
AlgebraicDecisionTree sum (const typename Base::LabelC &labelC) const
 
- Public Member Functions inherited from gtsam::DecisionTree< Key, double >
 DecisionTree ()
 
 DecisionTree (const double &y)
 
 DecisionTree (const Key &label, const double &y1, const double &y2)
 Create tree with 2 assignments y1, y2, splitting on variable label More...
 
 DecisionTree (const LabelC &label, const double &y1, const double &y2)
 
 DecisionTree (const std::vector< LabelC > &labelCs, const std::vector< double > &ys)
 
 DecisionTree (const std::vector< LabelC > &labelCs, const std::string &table)
 
 DecisionTree (Iterator begin, Iterator end, const Key &label)
 
 DecisionTree (const Key &label, const DecisionTree &f0, const DecisionTree &f1)
 
 DecisionTree (const Unary &op, DecisionTree &&other) noexcept
 Move constructor for DecisionTree. Very efficient as does not allocate anything, just changes in-place. But other is consumed. More...
 
 DecisionTree (const DecisionTree< Key, X > &other, Func Y_of_X)
 Convert from a different value type. More...
 
 DecisionTree (const DecisionTree< M, X > &other, const std::map< M, Key > &map, Func Y_of_X)
 Convert from a different value type X to value type Y, also translate labels via map from type M to L. More...
 
void print (const std::string &s, const LabelFormatter &labelFormatter, const ValueFormatter &valueFormatter) const
 GTSAM-style print. More...
 
bool equals (const DecisionTree &other, const CompareFunc &compare=&DefaultCompare) const
 
virtual ~DecisionTree ()=default
 Make virtual. More...
 
bool empty () const
 Check if tree is empty. More...
 
bool operator== (const DecisionTree &q) const
 
const double & operator() (const Assignment< Key > &x) const
 
void visit (Func f) const
 Visit all leaves in depth-first fashion. More...
 
void visitLeaf (Func f) const
 Visit all leaves in depth-first fashion. More...
 
void visitWith (Func f) const
 Visit all leaves in depth-first fashion. More...
 
size_t nrLeaves () const
 Return the number of leaves in the tree. More...
 
X fold (Func f, X x0) const
 Fold a binary function over the tree, returning accumulator. More...
 
std::set< Keylabels () const
 
DecisionTree apply (const Unary &op) const
 
DecisionTree apply (const UnaryAssignment &op) const
 Apply Unary operation "op" to f while also providing the corresponding assignment. More...
 
DecisionTree apply (const DecisionTree &g, const Binary &op) const
 
DecisionTree choose (const Key &label, size_t index) const
 
DecisionTree combine (const Key &label, size_t cardinality, const Binary &op) const
 
DecisionTree combine (const LabelC &labelC, const Binary &op) const
 
void dot (std::ostream &os, const LabelFormatter &labelFormatter, const ValueFormatter &valueFormatter, bool showZero=true) const
 
void dot (const std::string &name, const LabelFormatter &labelFormatter, const ValueFormatter &valueFormatter, bool showZero=true) const
 
std::string dot (const LabelFormatter &labelFormatter, const ValueFormatter &valueFormatter, bool showZero=true) const
 
std::pair< DecisionTree< Key, A >, DecisionTree< Key, B > > split (std::function< std::pair< A, B >(const double &)> AB_of_Y) const
 Convert into two trees with value types A and B. More...
 
 DecisionTree (const NodePtr &root)
 
- Public Member Functions inherited from gtsam::Conditional< DecisionTreeFactor, DiscreteConditional >
void print (const std::string &s="Conditional", const KeyFormatter &formatter=DefaultKeyFormatter) const
 
bool equals (const This &c, double tol=1e-9) const
 
virtual ~Conditional ()
 
size_t nrFrontals () const
 
size_t nrParents () const
 
Key firstFrontalKey () const
 
Frontals frontals () const
 
Parents parents () const
 
double operator() (const HybridValues &x) const
 Evaluate probability density, sugar. More...
 
virtual double negLogConstant () const
 All conditional types need to implement this as the negative log of the normalization constant to make it such that error>=0. More...
 
size_tnrFrontals ()
 
DecisionTreeFactor ::const_iterator beginFrontals () const
 
DecisionTreeFactor ::iterator beginFrontals ()
 
DecisionTreeFactor ::const_iterator endFrontals () const
 
DecisionTreeFactor ::iterator endFrontals ()
 
DecisionTreeFactor ::const_iterator beginParents () const
 
DecisionTreeFactor ::iterator beginParents ()
 
DecisionTreeFactor ::const_iterator endParents () const
 
DecisionTreeFactor ::iterator endParents ()
 

Additional Inherited Members

- Static Public Member Functions inherited from gtsam::DecisionTreeFactor
static double safe_div (const double &a, const double &b)
 
- Static Public Member Functions inherited from gtsam::DecisionTree< Key, double >
static NodePtr compose (Iterator begin, Iterator end, const Key &label)
 
- Static Public Member Functions inherited from gtsam::Conditional< DecisionTreeFactor, DiscreteConditional >
static bool CheckInvariants (const DiscreteConditional &conditional, const VALUES &x)
 
- Public Attributes inherited from gtsam::DecisionTree< Key, double >
NodePtr root_
 A DecisionTree just contains the root. TODO(dellaert): make protected. More...
 
- Protected Member Functions inherited from gtsam::DiscreteConditional
DiscreteConditional::ADT choose (const DiscreteValues &given, bool forceComplete) const
 Internal version of choose. More...
 
- Protected Member Functions inherited from gtsam::Factor
 Factor ()
 
template<typename CONTAINER >
 Factor (const CONTAINER &keys)
 
template<typename ITERATOR >
 Factor (ITERATOR first, ITERATOR last)
 
- Protected Member Functions inherited from gtsam::Conditional< DecisionTreeFactor, DiscreteConditional >
 Conditional ()
 
 Conditional (size_t nrFrontals)
 
- Static Protected Member Functions inherited from gtsam::Factor
template<typename CONTAINER >
static Factor FromKeys (const CONTAINER &keys)
 
template<typename ITERATOR >
static Factor FromIterators (ITERATOR first, ITERATOR last)
 
- Static Protected Member Functions inherited from gtsam::DecisionTree< Key, double >
static NodePtr build (It begin, It end, ValueIt beginY, ValueIt endY)
 
static NodePtr convertFrom (const typename DecisionTree< Key, X >::NodePtr &f, std::function< double(const X &)> Y_of_X)
 Convert from a DecisionTree<L, X> to DecisionTree<L, Y>. More...
 
static NodePtr convertFrom (const typename DecisionTree< M, X >::NodePtr &f, std::function< Key(const M &)> L_of_M, std::function< double(const X &)> Y_of_X)
 Convert from a DecisionTree<M, X> to DecisionTree<L, Y>. More...
 
static NodePtr create (It begin, It end, ValueIt beginY, ValueIt endY)
 
static bool DefaultCompare (const double &a, const double &b)
 Default method for comparison of two objects of type Y. More...
 
- Protected Attributes inherited from gtsam::DiscreteFactor
std::map< Key, size_tcardinalities_
 Map of Keys and their cardinalities. More...
 
- Protected Attributes inherited from gtsam::Factor
KeyVector keys_
 The keys involved in this factor. More...
 
- Protected Attributes inherited from gtsam::Conditional< DecisionTreeFactor, DiscreteConditional >
size_t nrFrontals_
 

Detailed Description

A prior probability on a set of discrete variables. Derives from DiscreteConditional

Definition at line 33 of file DiscreteDistribution.h.

Member Typedef Documentation

◆ Base

Definition at line 35 of file DiscreteDistribution.h.

Constructor & Destructor Documentation

◆ DiscreteDistribution() [1/5]

gtsam::DiscreteDistribution::DiscreteDistribution ( )
inline

Default constructor needed for serialization.

Definition at line 41 of file DiscreteDistribution.h.

◆ DiscreteDistribution() [2/5]

gtsam::DiscreteDistribution::DiscreteDistribution ( const DecisionTreeFactor f)
inlineexplicit

Constructor from factor.

Definition at line 44 of file DiscreteDistribution.h.

◆ DiscreteDistribution() [3/5]

gtsam::DiscreteDistribution::DiscreteDistribution ( const Signature s)
inlineexplicit

Construct from a Signature.

Example: DiscreteDistribution P(D % "3/2");

Definition at line 52 of file DiscreteDistribution.h.

◆ DiscreteDistribution() [4/5]

gtsam::DiscreteDistribution::DiscreteDistribution ( const DiscreteKey key,
const std::vector< double > &  spec 
)
inline

Construct from key and a vector of floats specifying the probability mass function (PMF).

Example: DiscreteDistribution P(D, {0.4, 0.6});

Definition at line 60 of file DiscreteDistribution.h.

◆ DiscreteDistribution() [5/5]

gtsam::DiscreteDistribution::DiscreteDistribution ( const DiscreteKey key,
const std::string &  spec 
)
inline

Construct from key and a string specifying the probability mass function (PMF).

Example: DiscreteDistribution P(D, "9/1 2/8 3/7 1/9");

Definition at line 69 of file DiscreteDistribution.h.

Member Function Documentation

◆ operator()()

double gtsam::DiscreteDistribution::operator() ( size_t  value) const

Evaluate given a single value.

Definition at line 29 of file DiscreteDistribution.cpp.

◆ pmf()

std::vector< double > gtsam::DiscreteDistribution::pmf ( ) const

We also want to keep the Base version, taking DiscreteValues:

Return entire probability mass function.

Definition at line 39 of file DiscreteDistribution.cpp.

◆ print()

void gtsam::DiscreteDistribution::print ( const std::string &  s = "Discrete Prior: ",
const KeyFormatter formatter = DefaultKeyFormatter 
) const
overridevirtual

GTSAM-style print.

Reimplemented from gtsam::DiscreteConditional.

Definition at line 24 of file DiscreteDistribution.cpp.


The documentation for this class was generated from the following files:


gtsam
Author(s):
autogenerated on Fri Nov 1 2024 03:51:16