brute_force_cpu.cpp
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3 Copyright (c) 2010--2011, Stephane Magnenat, ASL, ETHZ, Switzerland
4 You can contact the author at <stephane at magnenat dot net>
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31 
32 #include "nabo_private.h"
33 #include "index_heap.h"
34 
40 namespace Nabo
41 {
42  using namespace std;
43 
44  template<typename T, typename CloudType>
45  BruteForceSearch<T, CloudType>::BruteForceSearch(const CloudType& cloud, const Index dim, const unsigned creationOptionFlags):
46  NearestNeighbourSearch<T, CloudType>::NearestNeighbourSearch(cloud, dim, creationOptionFlags)
47  {
48 #ifdef EIGEN3_API
49  const_cast<Vector&>(this->minBound) = cloud.topRows(this->dim).rowwise().minCoeff();
50  const_cast<Vector&>(this->maxBound) = cloud.topRows(this->dim).rowwise().maxCoeff();
51 #else // EIGEN3_API
52  // compute bounds
53  for (int i = 0; i < cloud.cols(); ++i)
54  {
55  const Vector& v(cloud.block(0,i,this->dim,1));
56  const_cast<Vector&>(this->minBound) = this->minBound.cwise().min(v);
57  const_cast<Vector&>(this->maxBound) = this->maxBound.cwise().max(v);
58  }
59 #endif // EIGEN3_API
60  }
61 
62 
63  template<typename T, typename CloudType>
64  unsigned long BruteForceSearch<T, CloudType>::knn(const Matrix& query, IndexMatrix& indices, Matrix& dists2, const Index k, const T epsilon, const unsigned optionFlags, const T maxRadius) const
65  {
66  const Vector maxRadii(Vector::Constant(query.cols(), maxRadius));
67  return knn(query, indices, dists2, maxRadii, k, epsilon, optionFlags);
68  }
69 
70  template<typename T, typename CloudType>
71  unsigned long BruteForceSearch<T, CloudType>::knn(const Matrix& query, IndexMatrix& indices, Matrix& dists2, const Vector& maxRadii, const Index k, const T /*epsilon*/, const unsigned optionFlags) const
72  {
73  checkSizesKnn(query, indices, dists2, k, optionFlags, &maxRadii);
74 
75  const bool allowSelfMatch(optionFlags & NearestNeighbourSearch<T>::ALLOW_SELF_MATCH);
76  const bool sortResults(optionFlags & NearestNeighbourSearch<T>::SORT_RESULTS);
77  const bool collectStatistics(creationOptionFlags & NearestNeighbourSearch<T>::TOUCH_STATISTICS);
78 
79  IndexHeapSTL<Index, T> heap(k);
80 
81  for (int c = 0; c < query.cols(); ++c)
82  {
83  const T maxRadius(maxRadii[c]);
84  const T maxRadius2(maxRadius * maxRadius);
85  const Vector& q(query.block(0,c,dim,1));
86  heap.reset();
87  for (int i = 0; i < this->cloud.cols(); ++i)
88  {
89  const T dist(dist2<T>(this->cloud.block(0,i,dim,1), q));
90  if ((dist <= maxRadius2) &&
91  (dist < heap.headValue()) &&
92  (allowSelfMatch || (dist > numeric_limits<T>::epsilon())))
93  heap.replaceHead(i, dist);
94  }
95  if (sortResults)
96  heap.sort();
97  heap.getData(indices.col(c), dists2.col(c));
98  }
99  if (collectStatistics)
100  return (unsigned long)query.cols() * (unsigned long)this->cloud.cols();
101  else
102  return 0;
103  }
104 
105  template struct BruteForceSearch<float>;
106  template struct BruteForceSearch<double>;
111 }
Nabo
Namespace for Nabo.
Definition: experimental/kdtree_cpu.cpp:40
index_heap.h
implementation of index heaps
epsilon
double epsilon
Nabo::BruteForceSearch::knn
virtual unsigned long knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Index k, const T epsilon, const unsigned optionFlags, const T maxRadius) const
Definition: brute_force_cpu.cpp:64
nabo_private.h
header for implementation
Nabo::NearestNeighbourSearch< T, Eigen::Matrix< T, Eigen::Dynamic, Eigen::Dynamic > >::maxBound
const Vector maxBound
the high bound of the search space (axis-aligned bounding box)
Definition: nabo.h:282
Nabo::NearestNeighbourSearch< T, Eigen::Matrix< T, Eigen::Dynamic, Eigen::Dynamic > >::cloud
const CloudType & cloud
the reference to the data-point cloud, which must remain valid during the lifetime of the NearestNeig...
Definition: nabo.h:274
Nabo::BruteForceSearch::Vector
NearestNeighbourSearch< T, CloudType >::Vector Vector
Definition: nabo_private.h:74
Nabo::IndexHeapSTL::replaceHead
void replaceHead(const Index index, const Value value)
put value into heap, replace the largest value if full
Definition: index_heap.h:106
Nabo::IndexHeapSTL::headValue
const VT & headValue() const
get the largest value of the heap
Definition: index_heap.h:101
Nabo::NearestNeighbourSearch
Nearest neighbour search interface, templatized on scalar type.
Definition: nabo.h:258
Nabo::IndexHeapSTL
balanced-tree implementation of heap
Definition: index_heap.h:52
Nabo::NearestNeighbourSearch< T, Eigen::Matrix< T, Eigen::Dynamic, Eigen::Dynamic > >::minBound
const Vector minBound
the low bound of the search space (axis-aligned bounding box)
Definition: nabo.h:280
Nabo::IndexHeapSTL::reset
void reset()
reset to the empty heap
Definition: index_heap.h:93
std
Nabo::BruteForceSearch::Index
NearestNeighbourSearch< T, CloudType >::Index Index
Definition: nabo_private.h:76
Nabo::BruteForceSearch::IndexMatrix
NearestNeighbourSearch< T, CloudType >::IndexMatrix IndexMatrix
Definition: nabo_private.h:78
Nabo::IndexHeapSTL::sort
void sort()
sort the entries, from the smallest to the largest
Definition: index_heap.h:123
test.q
q
Definition: test.py:8
Nabo::BruteForceSearch::Matrix
NearestNeighbourSearch< T, CloudType >::Matrix Matrix
Definition: nabo_private.h:75
Nabo::IndexHeapSTL::getData
void getData(const Eigen::MatrixBase< DI > &indices, const Eigen::MatrixBase< DV > &values) const
get the data from the heap
Definition: index_heap.h:132
Nabo::BruteForceSearch
Brute-force nearest neighbour.
Definition: nabo_private.h:72
Nabo::BruteForceSearch::BruteForceSearch
BruteForceSearch(const CloudType &cloud, const Index dim, const unsigned creationOptionFlags)
constructor, calls NearestNeighbourSearch<T>(cloud)
Definition: brute_force_cpu.cpp:45


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