ConservativeSparseSparseProduct.h
Go to the documentation of this file.
1 // This file is part of Eigen, a lightweight C++ template library
2 // for linear algebra.
3 //
4 // Copyright (C) 2008-2015 Gael Guennebaud <gael.guennebaud@inria.fr>
5 //
6 // This Source Code Form is subject to the terms of the Mozilla
7 // Public License v. 2.0. If a copy of the MPL was not distributed
8 // with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
9 
10 #ifndef EIGEN_CONSERVATIVESPARSESPARSEPRODUCT_H
11 #define EIGEN_CONSERVATIVESPARSESPARSEPRODUCT_H
12 
13 namespace Eigen {
14 
15 namespace internal {
16 
17 template<typename Lhs, typename Rhs, typename ResultType>
18 static void conservative_sparse_sparse_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res, bool sortedInsertion = false)
19 {
20  typedef typename remove_all<Lhs>::type::Scalar LhsScalar;
21  typedef typename remove_all<Rhs>::type::Scalar RhsScalar;
22  typedef typename remove_all<ResultType>::type::Scalar ResScalar;
23 
24  // make sure to call innerSize/outerSize since we fake the storage order.
25  Index rows = lhs.innerSize();
26  Index cols = rhs.outerSize();
27  eigen_assert(lhs.outerSize() == rhs.innerSize());
28 
32 
33  std::memset(mask,0,sizeof(bool)*rows);
34 
35  evaluator<Lhs> lhsEval(lhs);
36  evaluator<Rhs> rhsEval(rhs);
37 
38  // estimate the number of non zero entries
39  // given a rhs column containing Y non zeros, we assume that the respective Y columns
40  // of the lhs differs in average of one non zeros, thus the number of non zeros for
41  // the product of a rhs column with the lhs is X+Y where X is the average number of non zero
42  // per column of the lhs.
43  // Therefore, we have nnz(lhs*rhs) = nnz(lhs) + nnz(rhs)
44  Index estimated_nnz_prod = lhsEval.nonZerosEstimate() + rhsEval.nonZerosEstimate();
45 
46  res.setZero();
47  res.reserve(Index(estimated_nnz_prod));
48  // we compute each column of the result, one after the other
49  for (Index j=0; j<cols; ++j)
50  {
51 
52  res.startVec(j);
53  Index nnz = 0;
54  for (typename evaluator<Rhs>::InnerIterator rhsIt(rhsEval, j); rhsIt; ++rhsIt)
55  {
56  RhsScalar y = rhsIt.value();
57  Index k = rhsIt.index();
58  for (typename evaluator<Lhs>::InnerIterator lhsIt(lhsEval, k); lhsIt; ++lhsIt)
59  {
60  Index i = lhsIt.index();
61  LhsScalar x = lhsIt.value();
62  if(!mask[i])
63  {
64  mask[i] = true;
65  values[i] = x * y;
66  indices[nnz] = i;
67  ++nnz;
68  }
69  else
70  values[i] += x * y;
71  }
72  }
73  if(!sortedInsertion)
74  {
75  // unordered insertion
76  for(Index k=0; k<nnz; ++k)
77  {
78  Index i = indices[k];
79  res.insertBackByOuterInnerUnordered(j,i) = values[i];
80  mask[i] = false;
81  }
82  }
83  else
84  {
85  // alternative ordered insertion code:
86  const Index t200 = rows/11; // 11 == (log2(200)*1.39)
87  const Index t = (rows*100)/139;
88 
89  // FIXME reserve nnz non zeros
90  // FIXME implement faster sorting algorithms for very small nnz
91  // if the result is sparse enough => use a quick sort
92  // otherwise => loop through the entire vector
93  // In order to avoid to perform an expensive log2 when the
94  // result is clearly very sparse we use a linear bound up to 200.
95  if((nnz<200 && nnz<t200) || nnz * numext::log2(int(nnz)) < t)
96  {
97  if(nnz>1) std::sort(indices,indices+nnz);
98  for(Index k=0; k<nnz; ++k)
99  {
100  Index i = indices[k];
101  res.insertBackByOuterInner(j,i) = values[i];
102  mask[i] = false;
103  }
104  }
105  else
106  {
107  // dense path
108  for(Index i=0; i<rows; ++i)
109  {
110  if(mask[i])
111  {
112  mask[i] = false;
113  res.insertBackByOuterInner(j,i) = values[i];
114  }
115  }
116  }
117  }
118  }
119  res.finalize();
120 }
121 
122 
123 } // end namespace internal
124 
125 namespace internal {
126 
127 template<typename Lhs, typename Rhs, typename ResultType,
128  int LhsStorageOrder = (traits<Lhs>::Flags&RowMajorBit) ? RowMajor : ColMajor,
129  int RhsStorageOrder = (traits<Rhs>::Flags&RowMajorBit) ? RowMajor : ColMajor,
130  int ResStorageOrder = (traits<ResultType>::Flags&RowMajorBit) ? RowMajor : ColMajor>
132 
133 template<typename Lhs, typename Rhs, typename ResultType>
135 {
137  typedef typename LhsCleaned::Scalar Scalar;
138 
139  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
140  {
144 
145  // If the result is tall and thin (in the extreme case a column vector)
146  // then it is faster to sort the coefficients inplace instead of transposing twice.
147  // FIXME, the following heuristic is probably not very good.
148  if(lhs.rows()>rhs.cols())
149  {
150  ColMajorMatrix resCol(lhs.rows(),rhs.cols());
151  // perform sorted insertion
152  internal::conservative_sparse_sparse_product_impl<Lhs,Rhs,ColMajorMatrix>(lhs, rhs, resCol, true);
153  res = resCol.markAsRValue();
154  }
155  else
156  {
157  ColMajorMatrixAux resCol(lhs.rows(),rhs.cols());
158  // resort to transpose to sort the entries
159  internal::conservative_sparse_sparse_product_impl<Lhs,Rhs,ColMajorMatrixAux>(lhs, rhs, resCol, false);
160  RowMajorMatrix resRow(resCol);
161  res = resRow.markAsRValue();
162  }
163  }
164 };
165 
166 template<typename Lhs, typename Rhs, typename ResultType>
168 {
169  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
170  {
173  RowMajorRhs rhsRow = rhs;
174  RowMajorRes resRow(lhs.rows(), rhs.cols());
175  internal::conservative_sparse_sparse_product_impl<RowMajorRhs,Lhs,RowMajorRes>(rhsRow, lhs, resRow);
176  res = resRow;
177  }
178 };
179 
180 template<typename Lhs, typename Rhs, typename ResultType>
182 {
183  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
184  {
187  RowMajorLhs lhsRow = lhs;
188  RowMajorRes resRow(lhs.rows(), rhs.cols());
189  internal::conservative_sparse_sparse_product_impl<Rhs,RowMajorLhs,RowMajorRes>(rhs, lhsRow, resRow);
190  res = resRow;
191  }
192 };
193 
194 template<typename Lhs, typename Rhs, typename ResultType>
196 {
197  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
198  {
200  RowMajorMatrix resRow(lhs.rows(), rhs.cols());
201  internal::conservative_sparse_sparse_product_impl<Rhs,Lhs,RowMajorMatrix>(rhs, lhs, resRow);
202  res = resRow;
203  }
204 };
205 
206 
207 template<typename Lhs, typename Rhs, typename ResultType>
209 {
211 
212  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
213  {
215  ColMajorMatrix resCol(lhs.rows(), rhs.cols());
216  internal::conservative_sparse_sparse_product_impl<Lhs,Rhs,ColMajorMatrix>(lhs, rhs, resCol);
217  res = resCol;
218  }
219 };
220 
221 template<typename Lhs, typename Rhs, typename ResultType>
223 {
224  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
225  {
228  ColMajorLhs lhsCol = lhs;
229  ColMajorRes resCol(lhs.rows(), rhs.cols());
230  internal::conservative_sparse_sparse_product_impl<ColMajorLhs,Rhs,ColMajorRes>(lhsCol, rhs, resCol);
231  res = resCol;
232  }
233 };
234 
235 template<typename Lhs, typename Rhs, typename ResultType>
237 {
238  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
239  {
242  ColMajorRhs rhsCol = rhs;
243  ColMajorRes resCol(lhs.rows(), rhs.cols());
244  internal::conservative_sparse_sparse_product_impl<Lhs,ColMajorRhs,ColMajorRes>(lhs, rhsCol, resCol);
245  res = resCol;
246  }
247 };
248 
249 template<typename Lhs, typename Rhs, typename ResultType>
251 {
252  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
253  {
256  RowMajorMatrix resRow(lhs.rows(),rhs.cols());
257  internal::conservative_sparse_sparse_product_impl<Rhs,Lhs,RowMajorMatrix>(rhs, lhs, resRow);
258  // sort the non zeros:
259  ColMajorMatrix resCol(resRow);
260  res = resCol;
261  }
262 };
263 
264 } // end namespace internal
265 
266 
267 namespace internal {
268 
269 template<typename Lhs, typename Rhs, typename ResultType>
270 static void sparse_sparse_to_dense_product_impl(const Lhs& lhs, const Rhs& rhs, ResultType& res)
271 {
272  typedef typename remove_all<Lhs>::type::Scalar LhsScalar;
273  typedef typename remove_all<Rhs>::type::Scalar RhsScalar;
274  Index cols = rhs.outerSize();
275  eigen_assert(lhs.outerSize() == rhs.innerSize());
276 
277  evaluator<Lhs> lhsEval(lhs);
278  evaluator<Rhs> rhsEval(rhs);
279 
280  for (Index j=0; j<cols; ++j)
281  {
282  for (typename evaluator<Rhs>::InnerIterator rhsIt(rhsEval, j); rhsIt; ++rhsIt)
283  {
284  RhsScalar y = rhsIt.value();
285  Index k = rhsIt.index();
286  for (typename evaluator<Lhs>::InnerIterator lhsIt(lhsEval, k); lhsIt; ++lhsIt)
287  {
288  Index i = lhsIt.index();
289  LhsScalar x = lhsIt.value();
290  res.coeffRef(i,j) += x * y;
291  }
292  }
293  }
294 }
295 
296 
297 } // end namespace internal
298 
299 namespace internal {
300 
301 template<typename Lhs, typename Rhs, typename ResultType,
302  int LhsStorageOrder = (traits<Lhs>::Flags&RowMajorBit) ? RowMajor : ColMajor,
303  int RhsStorageOrder = (traits<Rhs>::Flags&RowMajorBit) ? RowMajor : ColMajor>
305 
306 template<typename Lhs, typename Rhs, typename ResultType>
308 {
309  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
310  {
311  internal::sparse_sparse_to_dense_product_impl<Lhs,Rhs,ResultType>(lhs, rhs, res);
312  }
313 };
314 
315 template<typename Lhs, typename Rhs, typename ResultType>
317 {
318  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
319  {
321  ColMajorLhs lhsCol(lhs);
322  internal::sparse_sparse_to_dense_product_impl<ColMajorLhs,Rhs,ResultType>(lhsCol, rhs, res);
323  }
324 };
325 
326 template<typename Lhs, typename Rhs, typename ResultType>
328 {
329  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
330  {
332  ColMajorRhs rhsCol(rhs);
333  internal::sparse_sparse_to_dense_product_impl<Lhs,ColMajorRhs,ResultType>(lhs, rhsCol, res);
334  }
335 };
336 
337 template<typename Lhs, typename Rhs, typename ResultType>
339 {
340  static void run(const Lhs& lhs, const Rhs& rhs, ResultType& res)
341  {
342  Transpose<ResultType> trRes(res);
343  internal::sparse_sparse_to_dense_product_impl<Rhs,Lhs,Transpose<ResultType> >(rhs, lhs, trRes);
344  }
345 };
346 
347 
348 } // end namespace internal
349 
350 } // end namespace Eigen
351 
352 #endif // EIGEN_CONSERVATIVESPARSESPARSEPRODUCT_H
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, RowMajor, RowMajor, ColMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:197
Eigen::internal::Lhs
@ Lhs
Definition: TensorContractionMapper.h:19
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, RowMajor, RowMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:238
Eigen::internal::sparse_sparse_to_dense_product_selector< Lhs, Rhs, ResultType, RowMajor, RowMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:340
Eigen
Namespace containing all symbols from the Eigen library.
Definition: jet.h:637
Eigen::SparseMatrix
A versatible sparse matrix representation.
Definition: SparseMatrix.h:96
Eigen::internal::sparse_sparse_to_dense_product_selector< Lhs, Rhs, ResultType, ColMajor, RowMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:329
Eigen::internal::remove_all
Definition: Meta.h:126
eigen_assert
#define eigen_assert(x)
Definition: Macros.h:1037
x
set noclip points set clip one set noclip two set bar set border lt lw set xdata set ydata set zdata set x2data set y2data set boxwidth set dummy x
Definition: gnuplot_common_settings.hh:12
Eigen::RowMajorBit
const unsigned int RowMajorBit
Definition: Constants.h:66
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor, ColMajor >::LhsCleaned
remove_all< Lhs >::type LhsCleaned
Definition: ConservativeSparseSparseProduct.h:136
different_sigmas::values
HybridValues values
Definition: testHybridBayesNet.cpp:245
Eigen::RowMajor
@ RowMajor
Definition: Constants.h:321
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor, RowMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:212
res
cout<< "Here is the matrix m:"<< endl<< m<< endl;Matrix< ptrdiff_t, 3, 1 > res
Definition: PartialRedux_count.cpp:3
ei_declare_aligned_stack_constructed_variable
#define ei_declare_aligned_stack_constructed_variable(TYPE, NAME, SIZE, BUFFER)
Definition: Memory.h:768
rows
int rows
Definition: Tutorial_commainit_02.cpp:1
Eigen::Transpose
Expression of the transpose of a matrix.
Definition: Transpose.h:52
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, RowMajor, ColMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:183
test_eigen_tensor.indices
indices
Definition: test_eigen_tensor.py:33
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor, RowMajor >::Scalar
traits< typename remove_all< Lhs >::type >::Scalar Scalar
Definition: ConservativeSparseSparseProduct.h:210
Eigen::internal::sparse_sparse_to_dense_product_selector
Definition: ConservativeSparseSparseProduct.h:304
j
std::ptrdiff_t j
Definition: tut_arithmetic_redux_minmax.cpp:2
Eigen::internal::conservative_sparse_sparse_product_impl
static void conservative_sparse_sparse_product_impl(const Lhs &lhs, const Rhs &rhs, ResultType &res, bool sortedInsertion=false)
Definition: ConservativeSparseSparseProduct.h:18
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, RowMajor, ColMajor, ColMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:169
Eigen::internal::sparse_sparse_to_dense_product_impl
static void sparse_sparse_to_dense_product_impl(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:270
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, RowMajor, RowMajor, ColMajor >
Definition: ConservativeSparseSparseProduct.h:195
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, RowMajor, ColMajor, ColMajor >
Definition: ConservativeSparseSparseProduct.h:167
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, RowMajor, ColMajor >
Definition: ConservativeSparseSparseProduct.h:181
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor, ColMajor >::Scalar
LhsCleaned::Scalar Scalar
Definition: ConservativeSparseSparseProduct.h:137
Eigen::Triplet< double >
Eigen::internal::evaluator< Lhs >
Eigen::internal::conservative_sparse_sparse_product_selector
Definition: ConservativeSparseSparseProduct.h:131
Eigen::internal::sparse_sparse_to_dense_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:309
Eigen::numext::log2
int log2(int x)
Definition: Eigen/src/Core/MathFunctions.h:1443
Eigen::internal::traits
Definition: ForwardDeclarations.h:17
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor, RowMajor >
Definition: ConservativeSparseSparseProduct.h:208
Eigen::internal::Rhs
@ Rhs
Definition: TensorContractionMapper.h:18
Eigen::internal::y
const Scalar & y
Definition: Eigen/src/Core/MathFunctions.h:821
Eigen::internal::sparse_sparse_to_dense_product_selector< Lhs, Rhs, ResultType, RowMajor, ColMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:318
ceres::ColMajorMatrix
Eigen::Matrix< double, Eigen::Dynamic, Eigen::Dynamic, Eigen::ColMajor > ColMajorMatrix
Definition: gtsam/3rdparty/ceres/eigen.h:52
internal
Definition: BandTriangularSolver.h:13
Eigen::ColMajor
@ ColMajor
Definition: Constants.h:319
cols
int cols
Definition: Tutorial_commainit_02.cpp:1
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor, ColMajor >
Definition: ConservativeSparseSparseProduct.h:134
align_3::t
Point2 t(10, 10)
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, ColMajor, ColMajor, ColMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:139
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, RowMajor, RowMajor, RowMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:252
Eigen::internal::conservative_sparse_sparse_product_selector< Lhs, Rhs, ResultType, RowMajor, ColMajor, RowMajor >::run
static void run(const Lhs &lhs, const Rhs &rhs, ResultType &res)
Definition: ConservativeSparseSparseProduct.h:224
i
int i
Definition: BiCGSTAB_step_by_step.cpp:9
Scalar
SCALAR Scalar
Definition: bench_gemm.cpp:46
Eigen::Index
EIGEN_DEFAULT_DENSE_INDEX_TYPE Index
The Index type as used for the API.
Definition: Meta.h:74


gtsam
Author(s):
autogenerated on Sat Nov 16 2024 04:02:02