test_numpy_dtypes.cpp
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1 /*
2  tests/test_numpy_dtypes.cpp -- Structured and compound NumPy dtypes
3 
4  Copyright (c) 2016 Ivan Smirnov
5 
6  All rights reserved. Use of this source code is governed by a
7  BSD-style license that can be found in the LICENSE file.
8 */
9 
10 #include "pybind11_tests.h"
11 #include <pybind11/numpy.h>
12 
13 #ifdef __GNUC__
14 #define PYBIND11_PACKED(cls) cls __attribute__((__packed__))
15 #else
16 #define PYBIND11_PACKED(cls) __pragma(pack(push, 1)) cls __pragma(pack(pop))
17 #endif
18 
19 namespace py = pybind11;
20 
21 struct SimpleStruct {
22  bool bool_;
24  float float_;
25  long double ldbl_;
26 };
27 
28 std::ostream& operator<<(std::ostream& os, const SimpleStruct& v) {
29  return os << "s:" << v.bool_ << "," << v.uint_ << "," << v.float_ << "," << v.ldbl_;
30 }
31 
33  bool bool_;
34  float float_;
36  long double ldbl_;
37 };
38 
39 PYBIND11_PACKED(struct PackedStruct {
40  bool bool_;
42  float float_;
43  long double ldbl_;
44 });
45 
46 std::ostream& operator<<(std::ostream& os, const PackedStruct& v) {
47  return os << "p:" << v.bool_ << "," << v.uint_ << "," << v.float_ << "," << v.ldbl_;
48 }
49 
50 PYBIND11_PACKED(struct NestedStruct {
52  PackedStruct b;
53 });
54 
55 std::ostream& operator<<(std::ostream& os, const NestedStruct& v) {
56  return os << "n:a=" << v.a << ";b=" << v.b;
57 }
58 
59 struct PartialStruct {
60  bool bool_;
62  float float_;
64  long double ldbl_;
65 };
66 
71 };
72 
73 struct UnboundStruct { };
74 
75 struct StringStruct {
76  char a[3];
77  std::array<char, 3> b;
78 };
79 
80 struct ComplexStruct {
81  std::complex<float> cflt;
82  std::complex<double> cdbl;
83 };
84 
85 std::ostream& operator<<(std::ostream& os, const ComplexStruct& v) {
86  return os << "c:" << v.cflt << "," << v.cdbl;
87 }
88 
89 struct ArrayStruct {
90  char a[3][4];
91  int32_t b[2];
92  std::array<uint8_t, 3> c;
93  std::array<float, 2> d[4];
94 };
95 
96 PYBIND11_PACKED(struct StructWithUglyNames {
97  int8_t __x__;
98  uint64_t __y__;
99 });
100 
101 enum class E1 : int64_t { A = -1, B = 1 };
102 enum E2 : uint8_t { X = 1, Y = 2 };
103 
104 PYBIND11_PACKED(struct EnumStruct {
105  E1 e1;
106  E2 e2;
107 });
108 
109 std::ostream& operator<<(std::ostream& os, const StringStruct& v) {
110  os << "a='";
111  for (size_t i = 0; i < 3 && v.a[i]; i++) os << v.a[i];
112  os << "',b='";
113  for (size_t i = 0; i < 3 && v.b[i]; i++) os << v.b[i];
114  return os << "'";
115 }
116 
117 std::ostream& operator<<(std::ostream& os, const ArrayStruct& v) {
118  os << "a={";
119  for (int i = 0; i < 3; i++) {
120  if (i > 0)
121  os << ',';
122  os << '{';
123  for (int j = 0; j < 3; j++)
124  os << v.a[i][j] << ',';
125  os << v.a[i][3] << '}';
126  }
127  os << "},b={" << v.b[0] << ',' << v.b[1];
128  os << "},c={" << int(v.c[0]) << ',' << int(v.c[1]) << ',' << int(v.c[2]);
129  os << "},d={";
130  for (int i = 0; i < 4; i++) {
131  if (i > 0)
132  os << ',';
133  os << '{' << v.d[i][0] << ',' << v.d[i][1] << '}';
134  }
135  return os << '}';
136 }
137 
138 std::ostream& operator<<(std::ostream& os, const EnumStruct& v) {
139  return os << "e1=" << (v.e1 == E1::A ? "A" : "B") << ",e2=" << (v.e2 == E2::X ? "X" : "Y");
140 }
141 
142 template <typename T>
144  return py::array(py::buffer_info(nullptr, sizeof(T),
145  py::format_descriptor<T>::format(),
146  1, { n }, { sizeof(T) }));
147 }
148 
149 #define SET_TEST_VALS(s, i) do { \
150  s.bool_ = (i) % 2 != 0; \
151  s.uint_ = (uint32_t) (i); \
152  s.float_ = (float) (i) * 1.5f; \
153  s.ldbl_ = (long double) (i) * -2.5L; } while (0)
154 
155 template <typename S>
156 py::array_t<S, 0> create_recarray(size_t n) {
157  auto arr = mkarray_via_buffer<S>(n);
158  auto req = arr.request();
159  auto ptr = static_cast<S*>(req.ptr);
160  for (size_t i = 0; i < n; i++) {
161  SET_TEST_VALS(ptr[i], i);
162  }
163  return arr;
164 }
165 
166 template <typename S>
167 py::list print_recarray(py::array_t<S, 0> arr) {
168  const auto req = arr.request();
169  const auto ptr = static_cast<S*>(req.ptr);
170  auto l = py::list();
171  for (ssize_t i = 0; i < req.size; i++) {
172  std::stringstream ss;
173  ss << ptr[i];
174  l.append(py::str(ss.str()));
175  }
176  return l;
177 }
178 
179 py::array_t<int32_t, 0> test_array_ctors(int i) {
180  using arr_t = py::array_t<int32_t, 0>;
181 
182  std::vector<int32_t> data { 1, 2, 3, 4, 5, 6 };
183  std::vector<ssize_t> shape { 3, 2 };
184  std::vector<ssize_t> strides { 8, 4 };
185 
186  auto ptr = data.data();
187  auto vptr = (void *) ptr;
188  auto dtype = py::dtype("int32");
189 
190  py::buffer_info buf_ndim1(vptr, 4, "i", 6);
191  py::buffer_info buf_ndim1_null(nullptr, 4, "i", 6);
192  py::buffer_info buf_ndim2(vptr, 4, "i", 2, shape, strides);
193  py::buffer_info buf_ndim2_null(nullptr, 4, "i", 2, shape, strides);
194 
195  auto fill = [](py::array arr) {
196  auto req = arr.request();
197  for (int i = 0; i < 6; i++) ((int32_t *) req.ptr)[i] = i + 1;
198  return arr;
199  };
200 
201  switch (i) {
202  // shape: (3, 2)
203  case 10: return arr_t(shape, strides, ptr);
204  case 11: return py::array(shape, strides, ptr);
205  case 12: return py::array(dtype, shape, strides, vptr);
206  case 13: return arr_t(shape, ptr);
207  case 14: return py::array(shape, ptr);
208  case 15: return py::array(dtype, shape, vptr);
209  case 16: return arr_t(buf_ndim2);
210  case 17: return py::array(buf_ndim2);
211  // shape: (3, 2) - post-fill
212  case 20: return fill(arr_t(shape, strides));
213  case 21: return py::array(shape, strides, ptr); // can't have nullptr due to templated ctor
214  case 22: return fill(py::array(dtype, shape, strides));
215  case 23: return fill(arr_t(shape));
216  case 24: return py::array(shape, ptr); // can't have nullptr due to templated ctor
217  case 25: return fill(py::array(dtype, shape));
218  case 26: return fill(arr_t(buf_ndim2_null));
219  case 27: return fill(py::array(buf_ndim2_null));
220  // shape: (6, )
221  case 30: return arr_t(6, ptr);
222  case 31: return py::array(6, ptr);
223  case 32: return py::array(dtype, 6, vptr);
224  case 33: return arr_t(buf_ndim1);
225  case 34: return py::array(buf_ndim1);
226  // shape: (6, )
227  case 40: return fill(arr_t(6));
228  case 41: return py::array(6, ptr); // can't have nullptr due to templated ctor
229  case 42: return fill(py::array(dtype, 6));
230  case 43: return fill(arr_t(buf_ndim1_null));
231  case 44: return fill(py::array(buf_ndim1_null));
232  }
233  return arr_t();
234 }
235 
236 py::list test_dtype_ctors() {
237  py::list list;
238  list.append(py::dtype("int32"));
239  list.append(py::dtype(std::string("float64")));
240  list.append(py::dtype::from_args(py::str("bool")));
241  py::list names, offsets, formats;
242  py::dict dict;
243  names.append(py::str("a")); names.append(py::str("b")); dict["names"] = names;
244  offsets.append(py::int_(1)); offsets.append(py::int_(10)); dict["offsets"] = offsets;
245  formats.append(py::dtype("int32")); formats.append(py::dtype("float64")); dict["formats"] = formats;
246  dict["itemsize"] = py::int_(20);
247  list.append(py::dtype::from_args(dict));
248  list.append(py::dtype(names, formats, offsets, 20));
249  list.append(py::dtype(py::buffer_info((void *) 0, sizeof(unsigned int), "I", 1)));
250  list.append(py::dtype(py::buffer_info((void *) 0, 0, "T{i:a:f:b:}", 1)));
251  return list;
252 }
253 
254 struct A {};
255 struct B {};
256 
257 TEST_SUBMODULE(numpy_dtypes, m) {
258  try { py::module::import("numpy"); }
259  catch (...) { return; }
260 
261  // typeinfo may be registered before the dtype descriptor for scalar casts to work...
262  py::class_<SimpleStruct>(m, "SimpleStruct");
263 
266  PYBIND11_NUMPY_DTYPE(PackedStruct, bool_, uint_, float_, ldbl_);
267  PYBIND11_NUMPY_DTYPE(NestedStruct, a, b);
272  PYBIND11_NUMPY_DTYPE(EnumStruct, e1, e2);
273  PYBIND11_NUMPY_DTYPE(ComplexStruct, cflt, cdbl);
274 
275  // ... or after
276  py::class_<PackedStruct>(m, "PackedStruct");
277 
278  PYBIND11_NUMPY_DTYPE_EX(StructWithUglyNames, __x__, "x", __y__, "y");
279 
280  // If uncommented, this should produce a static_assert failure telling the user that the struct
281  // is not a POD type
282 // struct NotPOD { std::string v; NotPOD() : v("hi") {}; };
283 // PYBIND11_NUMPY_DTYPE(NotPOD, v);
284 
285  // Check that dtypes can be registered programmatically, both from
286  // initializer lists of field descriptors and from other containers.
287  py::detail::npy_format_descriptor<A>::register_dtype(
288  {}
289  );
290  py::detail::npy_format_descriptor<B>::register_dtype(
291  std::vector<py::detail::field_descriptor>{}
292  );
293 
294  // test_recarray, test_scalar_conversion
295  m.def("create_rec_simple", &create_recarray<SimpleStruct>);
296  m.def("create_rec_packed", &create_recarray<PackedStruct>);
297  m.def("create_rec_nested", [](size_t n) { // test_signature
298  py::array_t<NestedStruct, 0> arr = mkarray_via_buffer<NestedStruct>(n);
299  auto req = arr.request();
300  auto ptr = static_cast<NestedStruct*>(req.ptr);
301  for (size_t i = 0; i < n; i++) {
302  SET_TEST_VALS(ptr[i].a, i);
303  SET_TEST_VALS(ptr[i].b, i + 1);
304  }
305  return arr;
306  });
307  m.def("create_rec_partial", &create_recarray<PartialStruct>);
308  m.def("create_rec_partial_nested", [](size_t n) {
309  py::array_t<PartialNestedStruct, 0> arr = mkarray_via_buffer<PartialNestedStruct>(n);
310  auto req = arr.request();
311  auto ptr = static_cast<PartialNestedStruct*>(req.ptr);
312  for (size_t i = 0; i < n; i++) {
313  SET_TEST_VALS(ptr[i].a, i);
314  }
315  return arr;
316  });
317  m.def("print_rec_simple", &print_recarray<SimpleStruct>);
318  m.def("print_rec_packed", &print_recarray<PackedStruct>);
319  m.def("print_rec_nested", &print_recarray<NestedStruct>);
320 
321  // test_format_descriptors
322  m.def("get_format_unbound", []() { return py::format_descriptor<UnboundStruct>::format(); });
323  m.def("print_format_descriptors", []() {
324  py::list l;
325  for (const auto &fmt : {
326  py::format_descriptor<SimpleStruct>::format(),
327  py::format_descriptor<PackedStruct>::format(),
328  py::format_descriptor<NestedStruct>::format(),
329  py::format_descriptor<PartialStruct>::format(),
330  py::format_descriptor<PartialNestedStruct>::format(),
331  py::format_descriptor<StringStruct>::format(),
332  py::format_descriptor<ArrayStruct>::format(),
333  py::format_descriptor<EnumStruct>::format(),
334  py::format_descriptor<ComplexStruct>::format()
335  }) {
336  l.append(py::cast(fmt));
337  }
338  return l;
339  });
340 
341  // test_dtype
342  m.def("print_dtypes", []() {
343  py::list l;
344  for (const py::handle &d : {
345  py::dtype::of<SimpleStruct>(),
346  py::dtype::of<PackedStruct>(),
347  py::dtype::of<NestedStruct>(),
348  py::dtype::of<PartialStruct>(),
349  py::dtype::of<PartialNestedStruct>(),
350  py::dtype::of<StringStruct>(),
351  py::dtype::of<ArrayStruct>(),
352  py::dtype::of<EnumStruct>(),
353  py::dtype::of<StructWithUglyNames>(),
354  py::dtype::of<ComplexStruct>()
355  })
356  l.append(py::str(d));
357  return l;
358  });
359  m.def("test_dtype_ctors", &test_dtype_ctors);
360  m.def("test_dtype_methods", []() {
361  py::list list;
362  auto dt1 = py::dtype::of<int32_t>();
363  auto dt2 = py::dtype::of<SimpleStruct>();
364  list.append(dt1); list.append(dt2);
365  list.append(py::bool_(dt1.has_fields())); list.append(py::bool_(dt2.has_fields()));
366  list.append(py::int_(dt1.itemsize())); list.append(py::int_(dt2.itemsize()));
367  return list;
368  });
369  struct TrailingPaddingStruct {
370  int32_t a;
371  char b;
372  };
373  PYBIND11_NUMPY_DTYPE(TrailingPaddingStruct, a, b);
374  m.def("trailing_padding_dtype", []() { return py::dtype::of<TrailingPaddingStruct>(); });
375 
376  // test_string_array
377  m.def("create_string_array", [](bool non_empty) {
378  py::array_t<StringStruct, 0> arr = mkarray_via_buffer<StringStruct>(non_empty ? 4 : 0);
379  if (non_empty) {
380  auto req = arr.request();
381  auto ptr = static_cast<StringStruct*>(req.ptr);
382  for (ssize_t i = 0; i < req.size * req.itemsize; i++)
383  static_cast<char*>(req.ptr)[i] = 0;
384  ptr[1].a[0] = 'a'; ptr[1].b[0] = 'a';
385  ptr[2].a[0] = 'a'; ptr[2].b[0] = 'a';
386  ptr[3].a[0] = 'a'; ptr[3].b[0] = 'a';
387 
388  ptr[2].a[1] = 'b'; ptr[2].b[1] = 'b';
389  ptr[3].a[1] = 'b'; ptr[3].b[1] = 'b';
390 
391  ptr[3].a[2] = 'c'; ptr[3].b[2] = 'c';
392  }
393  return arr;
394  });
395  m.def("print_string_array", &print_recarray<StringStruct>);
396 
397  // test_array_array
398  m.def("create_array_array", [](size_t n) {
399  py::array_t<ArrayStruct, 0> arr = mkarray_via_buffer<ArrayStruct>(n);
400  auto ptr = (ArrayStruct *) arr.mutable_data();
401  for (size_t i = 0; i < n; i++) {
402  for (size_t j = 0; j < 3; j++)
403  for (size_t k = 0; k < 4; k++)
404  ptr[i].a[j][k] = char('A' + (i * 100 + j * 10 + k) % 26);
405  for (size_t j = 0; j < 2; j++)
406  ptr[i].b[j] = int32_t(i * 1000 + j);
407  for (size_t j = 0; j < 3; j++)
408  ptr[i].c[j] = uint8_t(i * 10 + j);
409  for (size_t j = 0; j < 4; j++)
410  for (size_t k = 0; k < 2; k++)
411  ptr[i].d[j][k] = float(i) * 100.0f + float(j) * 10.0f + float(k);
412  }
413  return arr;
414  });
415  m.def("print_array_array", &print_recarray<ArrayStruct>);
416 
417  // test_enum_array
418  m.def("create_enum_array", [](size_t n) {
419  py::array_t<EnumStruct, 0> arr = mkarray_via_buffer<EnumStruct>(n);
420  auto ptr = (EnumStruct *) arr.mutable_data();
421  for (size_t i = 0; i < n; i++) {
422  ptr[i].e1 = static_cast<E1>(-1 + ((int) i % 2) * 2);
423  ptr[i].e2 = static_cast<E2>(1 + (i % 2));
424  }
425  return arr;
426  });
427  m.def("print_enum_array", &print_recarray<EnumStruct>);
428 
429  // test_complex_array
430  m.def("create_complex_array", [](size_t n) {
431  py::array_t<ComplexStruct, 0> arr = mkarray_via_buffer<ComplexStruct>(n);
432  auto ptr = (ComplexStruct *) arr.mutable_data();
433  for (size_t i = 0; i < n; i++) {
434  ptr[i].cflt.real(float(i));
435  ptr[i].cflt.imag(float(i) + 0.25f);
436  ptr[i].cdbl.real(double(i) + 0.5);
437  ptr[i].cdbl.imag(double(i) + 0.75);
438  }
439  return arr;
440  });
441  m.def("print_complex_array", &print_recarray<ComplexStruct>);
442 
443  // test_array_constructors
444  m.def("test_array_ctors", &test_array_ctors);
445 
446  // test_compare_buffer_info
447  struct CompareStruct {
448  bool x;
449  uint32_t y;
450  float z;
451  };
452  PYBIND11_NUMPY_DTYPE(CompareStruct, x, y, z);
453  m.def("compare_buffer_info", []() {
454  py::list list;
455  list.append(py::bool_(py::detail::compare_buffer_info<float>::compare(py::buffer_info(nullptr, sizeof(float), "f", 1))));
456  list.append(py::bool_(py::detail::compare_buffer_info<unsigned>::compare(py::buffer_info(nullptr, sizeof(int), "I", 1))));
457  list.append(py::bool_(py::detail::compare_buffer_info<long>::compare(py::buffer_info(nullptr, sizeof(long), "l", 1))));
458  list.append(py::bool_(py::detail::compare_buffer_info<long>::compare(py::buffer_info(nullptr, sizeof(long), sizeof(long) == sizeof(int) ? "i" : "q", 1))));
459  list.append(py::bool_(py::detail::compare_buffer_info<CompareStruct>::compare(py::buffer_info(nullptr, sizeof(CompareStruct), "T{?:x:3xI:y:f:z:}", 1))));
460  return list;
461  });
462  m.def("buffer_to_dtype", [](py::buffer& buf) { return py::dtype(buf.request()); });
463 
464  // test_scalar_conversion
465  m.def("f_simple", [](SimpleStruct s) { return s.uint_ * 10; });
466  m.def("f_packed", [](PackedStruct s) { return s.uint_ * 10; });
467  m.def("f_nested", [](NestedStruct s) { return s.a.uint_ * 10; });
468 
469  // test_register_dtype
470  m.def("register_dtype", []() { PYBIND11_NUMPY_DTYPE(SimpleStruct, bool_, uint_, float_, ldbl_); });
471 
472  // test_str_leak
473  m.def("dtype_wrapper", [](py::object d) { return py::dtype::from_args(std::move(d)); });
474 }
Matrix3f m
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set noclip points set clip one set noclip two set bar set border lt lw set xdata set ydata set zdata set x2data set y2data set boxwidth set dummy y set format x g set format y g set format x2 g set format y2 g set format z g set angles radians set nogrid set key title set key left top Right noreverse box linetype linewidth samplen spacing width set nolabel set noarrow set nologscale set logscale x set offsets
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