Tridiagonalization.h

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// This file is part of Eigen, a lightweight C++ template library
// for linear algebra. Eigen itself is part of the KDE project.
//
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
//
// Eigen is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 3 of the License, or (at your option) any later version.
//
// Alternatively, you can redistribute it and/or
// modify it under the terms of the GNU General Public License as
// published by the Free Software Foundation; either version 2 of
// the License, or (at your option) any later version.
//
// Eigen is distributed in the hope that it will be useful, but WITHOUT ANY
// WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
// FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License or the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License and a copy of the GNU General Public License along with
// Eigen. If not, see <http://www.gnu.org/licenses/>.

#ifndef EIGEN_TRIDIAGONALIZATION_H
#define EIGEN_TRIDIAGONALIZATION_H

template<typename _MatrixType> class Tridiagonalization
{
  public:

    typedef _MatrixType MatrixType;
    typedef typename MatrixType::Scalar Scalar;
    typedef typename NumTraits<Scalar>::Real RealScalar;
    typedef typename ei_packet_traits<Scalar>::type Packet;

    enum {
      Size = MatrixType::RowsAtCompileTime,
      SizeMinusOne = MatrixType::RowsAtCompileTime==Dynamic
                   ? Dynamic
                   : MatrixType::RowsAtCompileTime-1,
      PacketSize = ei_packet_traits<Scalar>::size
    };

    typedef Matrix<Scalar, SizeMinusOne, 1> CoeffVectorType;
    typedef Matrix<RealScalar, Size, 1> DiagonalType;
    typedef Matrix<RealScalar, SizeMinusOne, 1> SubDiagonalType;

    typedef typename NestByValue<DiagonalCoeffs<MatrixType> >::RealReturnType DiagonalReturnType;

    typedef typename NestByValue<DiagonalCoeffs<
        NestByValue<Block<MatrixType,SizeMinusOne,SizeMinusOne> > > >::RealReturnType SubDiagonalReturnType;

    Tridiagonalization(int size = Size==Dynamic ? 2 : Size)
      : m_matrix(size,size), m_hCoeffs(size-1)
    {}

    Tridiagonalization(const MatrixType& matrix)
      : m_matrix(matrix),
        m_hCoeffs(matrix.cols()-1)
    {
      _compute(m_matrix, m_hCoeffs);
    }

    void compute(const MatrixType& matrix)
    {
      m_matrix = matrix;
      m_hCoeffs.resize(matrix.rows()-1, 1);
      _compute(m_matrix, m_hCoeffs);
    }

    inline CoeffVectorType householderCoefficients(void) const { return m_hCoeffs; }

    inline const MatrixType& packedMatrix(void) const { return m_matrix; }

    MatrixType matrixQ(void) const;
    MatrixType matrixT(void) const;
    const DiagonalReturnType diagonal(void) const;
    const SubDiagonalReturnType subDiagonal(void) const;

    static void decomposeInPlace(MatrixType& mat, DiagonalType& diag, SubDiagonalType& subdiag, bool extractQ = true);

  private:

    static void _compute(MatrixType& matA, CoeffVectorType& hCoeffs);

    static void _decomposeInPlace3x3(MatrixType& mat, DiagonalType& diag, SubDiagonalType& subdiag, bool extractQ = true);

  protected:
    MatrixType m_matrix;
    CoeffVectorType m_hCoeffs;
};

template<typename MatrixType>
const typename Tridiagonalization<MatrixType>::DiagonalReturnType
Tridiagonalization<MatrixType>::diagonal(void) const
{
  return m_matrix.diagonal().nestByValue().real();
}

template<typename MatrixType>
const typename Tridiagonalization<MatrixType>::SubDiagonalReturnType
Tridiagonalization<MatrixType>::subDiagonal(void) const
{
  int n = m_matrix.rows();
  return Block<MatrixType,SizeMinusOne,SizeMinusOne>(m_matrix, 1, 0, n-1,n-1)
    .nestByValue().diagonal().nestByValue().real();
}

template<typename MatrixType>
typename Tridiagonalization<MatrixType>::MatrixType
Tridiagonalization<MatrixType>::matrixT(void) const
{
  // FIXME should this function (and other similar ones) rather take a matrix as argument
  // and fill it ? (to avoid temporaries)
  int n = m_matrix.rows();
  MatrixType matT = m_matrix;
  matT.corner(TopRight,n-1, n-1).diagonal() = subDiagonal().template cast<Scalar>().conjugate();
  if (n>2)
  {
    matT.corner(TopRight,n-2, n-2).template part<UpperTriangular>().setZero();
    matT.corner(BottomLeft,n-2, n-2).template part<LowerTriangular>().setZero();
  }
  return matT;
}

#ifndef EIGEN_HIDE_HEAVY_CODE

template<typename MatrixType>
void Tridiagonalization<MatrixType>::_compute(MatrixType& matA, CoeffVectorType& hCoeffs)
{
  assert(matA.rows()==matA.cols());
  int n = matA.rows();
//   std::cerr << matA << "\n\n";
  for (int i = 0; i<n-2; ++i)
  {
    // let's consider the vector v = i-th column starting at position i+1

    // start of the householder transformation
    // squared norm of the vector v skipping the first element
    RealScalar v1norm2 = matA.col(i).end(n-(i+2)).squaredNorm();

    // FIXME comparing against 1
    if (ei_isMuchSmallerThan(v1norm2,static_cast<Scalar>(1)))
    {
      hCoeffs.coeffRef(i) = 0.;
    }
    else
    {
      Scalar v0 = matA.col(i).coeff(i+1);
      RealScalar beta = ei_sqrt(ei_abs2(v0)+v1norm2);
      if (ei_real(v0)>=0.)
        beta = -beta;
      matA.col(i).end(n-(i+2)) *= (Scalar(1)/(v0-beta));
      matA.col(i).coeffRef(i+1) = beta;
      Scalar h = (beta - v0) / beta;
      // end of the householder transformation

      // Apply similarity transformation to remaining columns,
      // i.e., A = H' A H where H = I - h v v' and v = matA.col(i).end(n-i-1)

      matA.col(i).coeffRef(i+1) = 1;

      /* This is the initial algorithm which minimize operation counts and maximize
       * the use of Eigen's expression. Unfortunately, the first matrix-vector product
       * using Part<LowerTriangular|Selfadjoint>  is very very slow */
      #ifdef EIGEN_NEVER_DEFINED
      // matrix - vector product
      hCoeffs.end(n-i-1) = (matA.corner(BottomRight,n-i-1,n-i-1).template part<LowerTriangular|SelfAdjoint>()
                                * (h * matA.col(i).end(n-i-1))).lazy();
      // simple axpy
      hCoeffs.end(n-i-1) += (h * Scalar(-0.5) * matA.col(i).end(n-i-1).dot(hCoeffs.end(n-i-1)))
                            * matA.col(i).end(n-i-1);
      // rank-2 update
      //Block<MatrixType,Dynamic,1> B(matA,i+1,i,n-i-1,1);
      matA.corner(BottomRight,n-i-1,n-i-1).template part<LowerTriangular>() -=
            (matA.col(i).end(n-i-1) * hCoeffs.end(n-i-1).adjoint()).lazy()
          + (hCoeffs.end(n-i-1) * matA.col(i).end(n-i-1).adjoint()).lazy();
      #endif
      /* end initial algorithm */

      /* If we still want to minimize operation count (i.e., perform operation on the lower part only)
       * then we could provide the following algorithm for selfadjoint - vector product. However, a full
       * matrix-vector product is still faster (at least for dynamic size, and not too small, did not check
       * small matrices). The algo performs block matrix-vector and transposed matrix vector products. */
      #ifdef EIGEN_NEVER_DEFINED
      int n4 = (std::max(0,n-4)/4)*4;
      hCoeffs.end(n-i-1).setZero();
      for (int b=i+1; b<n4; b+=4)
      {
        // the ?x4 part:
        hCoeffs.end(b-4) +=
            Block<MatrixType,Dynamic,4>(matA,b+4,b,n-b-4,4) * matA.template block<4,1>(b,i);
        // the respective transposed part:
        Block<CoeffVectorType,4,1>(hCoeffs, b, 0, 4,1) +=
            Block<MatrixType,Dynamic,4>(matA,b+4,b,n-b-4,4).adjoint() * Block<MatrixType,Dynamic,1>(matA,b+4,i,n-b-4,1);
        // the 4x4 block diagonal:
        Block<CoeffVectorType,4,1>(hCoeffs, b, 0, 4,1) +=
            (Block<MatrixType,4,4>(matA,b,b,4,4).template part<LowerTriangular|SelfAdjoint>()
             * (h * Block<MatrixType,4,1>(matA,b,i,4,1))).lazy();
      }
      #endif
      // todo: handle the remaining part
      /* end optimized selfadjoint - vector product */

      /* Another interesting note: the above rank-2 update is much slower than the following hand written loop.
       * After an analyze of the ASM, it seems GCC (4.2) generate poor code because of the Block. Moreover,
       * if we remove the specialization of Block for Matrix then it is even worse, much worse ! */
      #ifdef EIGEN_NEVER_DEFINED
      for (int j1=i+1; j1<n; ++j1)
      for (int i1=j1;  i1<n; ++i1)
        matA.coeffRef(i1,j1) -= matA.coeff(i1,i)*ei_conj(hCoeffs.coeff(j1-1))
                              + hCoeffs.coeff(i1-1)*ei_conj(matA.coeff(j1,i));
      #endif
      /* end hand writen partial rank-2 update */

      /* The current fastest implementation: the full matrix is used, no "optimization" to use/compute
       * only half of the matrix. Custom vectorization of the inner col -= alpha X + beta Y such that access
       * to col are always aligned. Once we support that in Assign, then the algorithm could be rewriten as
       * a single compact expression. This code is therefore a good benchmark when will do that. */

      // let's use the end of hCoeffs to store temporary values:
      hCoeffs.end(n-i-1) = (matA.corner(BottomRight,n-i-1,n-i-1) * (h * matA.col(i).end(n-i-1))).lazy();
      // FIXME in the above expr a temporary is created because of the scalar multiple by h

      hCoeffs.end(n-i-1) += (h * Scalar(-0.5) * matA.col(i).end(n-i-1).dot(hCoeffs.end(n-i-1)))
                            * matA.col(i).end(n-i-1);

      const Scalar* EIGEN_RESTRICT pb = &matA.coeffRef(0,i);
      const Scalar* EIGEN_RESTRICT pa = (&hCoeffs.coeffRef(0)) - 1;
      for (int j1=i+1; j1<n; ++j1)
      {
        int starti = i+1;
        int alignedEnd = starti;
        if (PacketSize>1 && (int(MatrixType::Flags)&RowMajor) == 0)
        {
          int alignedStart = (starti) + ei_alignmentOffset(&matA.coeffRef(starti,j1), n-starti);
          alignedEnd = alignedStart + ((n-alignedStart)/PacketSize)*PacketSize;

          for (int i1=starti; i1<alignedStart; ++i1)
            matA.coeffRef(i1,j1) -= matA.coeff(i1,i)*ei_conj(hCoeffs.coeff(j1-1))
                                  + hCoeffs.coeff(i1-1)*ei_conj(matA.coeff(j1,i));

          Packet tmp0 = ei_pset1(hCoeffs.coeff(j1-1));
          Packet tmp1 = ei_pset1(matA.coeff(j1,i));
          Scalar* pc = &matA.coeffRef(0,j1);
          for (int i1=alignedStart ; i1<alignedEnd; i1+=PacketSize)
            ei_pstore(pc+i1,ei_psub(ei_pload(pc+i1),
              ei_padd(ei_pmul(tmp0, ei_ploadu(pb+i1)),
                      ei_pmul(tmp1, ei_ploadu(pa+i1)))));
        }
        for (int i1=alignedEnd; i1<n; ++i1)
          matA.coeffRef(i1,j1) -= matA.coeff(i1,i)*ei_conj(hCoeffs.coeff(j1-1))
                                + hCoeffs.coeff(i1-1)*ei_conj(matA.coeff(j1,i));
      }
      /* end optimized implementation */

      // note: at that point matA(i+1,i+1) is the (i+1)-th element of the final diagonal
      // note: the sequence of the beta values leads to the subdiagonal entries
      matA.col(i).coeffRef(i+1) = beta;

      hCoeffs.coeffRef(i) = h;
    }
  }
  if (NumTraits<Scalar>::IsComplex)
  {
    // Householder transformation on the remaining single scalar
    int i = n-2;
    Scalar v0 = matA.col(i).coeff(i+1);
    RealScalar beta = ei_abs(v0);
    if (ei_real(v0)>=0.)
      beta = -beta;
    matA.col(i).coeffRef(i+1) = beta;
    if(ei_isMuchSmallerThan(beta, Scalar(1))) hCoeffs.coeffRef(i) = Scalar(0);
    else hCoeffs.coeffRef(i) = (beta - v0) / beta;
  }
  else
  {
    hCoeffs.coeffRef(n-2) = 0;
  }
}

template<typename MatrixType>
typename Tridiagonalization<MatrixType>::MatrixType
Tridiagonalization<MatrixType>::matrixQ(void) const
{
  int n = m_matrix.rows();
  MatrixType matQ = MatrixType::Identity(n,n);
  for (int i = n-2; i>=0; i--)
  {
    Scalar tmp = m_matrix.coeff(i+1,i);
    m_matrix.const_cast_derived().coeffRef(i+1,i) = 1;

    matQ.corner(BottomRight,n-i-1,n-i-1) -=
      ((m_hCoeffs.coeff(i) * m_matrix.col(i).end(n-i-1)) *
      (m_matrix.col(i).end(n-i-1).adjoint() * matQ.corner(BottomRight,n-i-1,n-i-1)).lazy()).lazy();

    m_matrix.const_cast_derived().coeffRef(i+1,i) = tmp;
  }
  return matQ;
}

template<typename MatrixType>
void Tridiagonalization<MatrixType>::decomposeInPlace(MatrixType& mat, DiagonalType& diag, SubDiagonalType& subdiag, bool extractQ)
{
  int n = mat.rows();
  ei_assert(mat.cols()==n && diag.size()==n && subdiag.size()==n-1);
  if (n==3 && (!NumTraits<Scalar>::IsComplex) )
  {
    _decomposeInPlace3x3(mat, diag, subdiag, extractQ);
  }
  else
  {
    Tridiagonalization tridiag(mat);
    diag = tridiag.diagonal();
    subdiag = tridiag.subDiagonal();
    if (extractQ)
      mat = tridiag.matrixQ();
  }
}

template<typename MatrixType>
void Tridiagonalization<MatrixType>::_decomposeInPlace3x3(MatrixType& mat, DiagonalType& diag, SubDiagonalType& subdiag, bool extractQ)
{
  diag[0] = ei_real(mat(0,0));
  RealScalar v1norm2 = ei_abs2(mat(0,2));
  if (v1norm2==RealScalar(0))
  {
    diag[1] = ei_real(mat(1,1));
    diag[2] = ei_real(mat(2,2));
    subdiag[0] = ei_real(mat(0,1));
    subdiag[1] = ei_real(mat(1,2));
    if (extractQ)
      mat.setIdentity();
  }
  else
  {
    RealScalar beta = ei_sqrt(ei_abs2(mat(0,1))+v1norm2);
    RealScalar invBeta = RealScalar(1)/beta;
    Scalar m01 = mat(0,1) * invBeta;
    Scalar m02 = mat(0,2) * invBeta;
    Scalar q = RealScalar(2)*m01*mat(1,2) + m02*(mat(2,2) - mat(1,1));
    diag[1] = ei_real(mat(1,1) + m02*q);
    diag[2] = ei_real(mat(2,2) - m02*q);
    subdiag[0] = beta;
    subdiag[1] = ei_real(mat(1,2) - m01 * q);
    if (extractQ)
    {
      mat(0,0) = 1;
      mat(0,1) = 0;
      mat(0,2) = 0;
      mat(1,0) = 0;
      mat(1,1) = m01;
      mat(1,2) = m02;
      mat(2,0) = 0;
      mat(2,1) = m02;
      mat(2,2) = -m01;
    }
  }
}

#endif // EIGEN_HIDE_HEAVY_CODE

#endif // EIGEN_TRIDIAGONALIZATION_H

---

vcglib
Author(s): Christian Bersch
autogenerated on Fri Jan 11 09:18:15 2013