41 #include <boost/program_options.hpp> 69 string getDataDir()
const {
return m_variables[
"dataDir"].as<
string>();}
72 size_t getHSPChunk0()
const {
return m_variables[
"hsp_chunk_0"].as<
size_t>(); }
73 size_t getHSPChunk1()
const {
return m_variables[
"hsp_chunk_1"].as<
size_t>(); }
74 size_t getHSPChunk2()
const {
return m_variables[
"hsp_chunk_2"].as<
size_t>(); }
76 bool addAnnotations()
const {
return (m_variables[
"addAnnotations"].as<int>() != 0);}
94 cout <<
"##### Program options: " << endl;
95 cout <<
"##### Data directory \t\t: " << o.
getDataDir() << endl;