seq.c File Reference

#include <GKlib.h>

Include dependency graph for seq.c:

Go to the source code of this file.

Functions
gk_i2cc2i_t *	gk_i2cc2i_create_common (char *alphabet)
	This function creates the localizations for the various sequences. More...
void	gk_seq_free (gk_seq_t *seq)
	This function frees the memory allocated to the seq structure. More...
void	gk_seq_init (gk_seq_t *seq)
gk_seq_t *	gk_seq_ReadGKMODPSSM (char *filename)
	This function reads a pssm in the format of gkmod pssm. More...

Function Documentation

gk_i2cc2i_create_common()

gk_i2cc2i_t* gk_i2cc2i_create_common

(

char *

alphabet

)

This function creates the localizations for the various sequences.

Parameters

string

i.e amino acids, nucleotides, sequences

Returns

gk_i2cc2i_t variable

Definition at line 48 of file seq.c.

gk_seq_free()

void gk_seq_free

(

gk_seq_t *

seq

)

This function frees the memory allocated to the seq structure.

Parameters

gk_seq_t

Returns

nothing

Definition at line 166 of file seq.c.

gk_seq_init()

void gk_seq_init

(

gk_seq_t *

seq

)

Definition at line 27 of file seq.c.

gk_seq_ReadGKMODPSSM()

gk_seq_t* gk_seq_ReadGKMODPSSM

(

char *

filename

)

This function reads a pssm in the format of gkmod pssm.

Parameters

file_name

is the name of the pssm file

Returns

gk_seq_t

Definition at line 83 of file seq.c.