Functions
seq.c File Reference
#include <GKlib.h>
Include dependency graph for seq.c:

Go to the source code of this file.

Functions

gk_i2cc2i_tgk_i2cc2i_create_common (char *alphabet)
 This function creates the localizations for the various sequences. More...
 
void gk_seq_free (gk_seq_t *seq)
 This function frees the memory allocated to the seq structure. More...
 
void gk_seq_init (gk_seq_t *seq)
 
gk_seq_tgk_seq_ReadGKMODPSSM (char *filename)
 This function reads a pssm in the format of gkmod pssm. More...
 

Function Documentation

◆ gk_i2cc2i_create_common()

gk_i2cc2i_t* gk_i2cc2i_create_common ( char *  alphabet)

This function creates the localizations for the various sequences.

Parameters
stringi.e amino acids, nucleotides, sequences
Returns
gk_i2cc2i_t variable

Definition at line 48 of file seq.c.

◆ gk_seq_free()

void gk_seq_free ( gk_seq_t seq)

This function frees the memory allocated to the seq structure.

Parameters
gk_seq_t
Returns
nothing

Definition at line 166 of file seq.c.

◆ gk_seq_init()

void gk_seq_init ( gk_seq_t seq)

Definition at line 27 of file seq.c.

◆ gk_seq_ReadGKMODPSSM()

gk_seq_t* gk_seq_ReadGKMODPSSM ( char *  filename)

This function reads a pssm in the format of gkmod pssm.

Parameters
file_nameis the name of the pssm file
Returns
gk_seq_t

Definition at line 83 of file seq.c.



gtsam
Author(s):
autogenerated on Tue Jul 4 2023 02:40:52