ColPivHouseholderQR.h

Go to the documentation of this file.

// This file is part of Eigen, a lightweight C++ template library
// for linear algebra.
//
// Copyright (C) 2008-2009 Gael Guennebaud <gael.guennebaud@inria.fr>
// Copyright (C) 2009 Benoit Jacob <jacob.benoit.1@gmail.com>
//
// This Source Code Form is subject to the terms of the Mozilla
// Public License v. 2.0. If a copy of the MPL was not distributed
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.

#ifndef EIGEN_COLPIVOTINGHOUSEHOLDERQR_H
#define EIGEN_COLPIVOTINGHOUSEHOLDERQR_H

namespace Eigen {

namespace internal {
template<typename _MatrixType> struct traits<ColPivHouseholderQR<_MatrixType> >
 : traits<_MatrixType>
{
  enum { Flags = 0 };
};

} // end namespace internal

template<typename _MatrixType> class ColPivHouseholderQR
{
  public:

    typedef _MatrixType MatrixType;
    enum {
      RowsAtCompileTime = MatrixType::RowsAtCompileTime,
      ColsAtCompileTime = MatrixType::ColsAtCompileTime,
      MaxRowsAtCompileTime = MatrixType::MaxRowsAtCompileTime,
      MaxColsAtCompileTime = MatrixType::MaxColsAtCompileTime
    };
    typedef typename MatrixType::Scalar Scalar;
    typedef typename MatrixType::RealScalar RealScalar;
    // FIXME should be int
    typedef typename MatrixType::StorageIndex StorageIndex;
    typedef typename internal::plain_diag_type<MatrixType>::type HCoeffsType;
    typedef PermutationMatrix<ColsAtCompileTime, MaxColsAtCompileTime> PermutationType;
    typedef typename internal::plain_row_type<MatrixType, Index>::type IntRowVectorType;
    typedef typename internal::plain_row_type<MatrixType>::type RowVectorType;
    typedef typename internal::plain_row_type<MatrixType, RealScalar>::type RealRowVectorType;
    typedef HouseholderSequence<MatrixType,typename internal::remove_all<typename HCoeffsType::ConjugateReturnType>::type> HouseholderSequenceType;
    typedef typename MatrixType::PlainObject PlainObject;

  private:

    typedef typename PermutationType::StorageIndex PermIndexType;

  public:

    ColPivHouseholderQR()
      : m_qr(),
        m_hCoeffs(),
        m_colsPermutation(),
        m_colsTranspositions(),
        m_temp(),
        m_colNormsUpdated(),
        m_colNormsDirect(),
        m_isInitialized(false),
        m_usePrescribedThreshold(false) {}

    ColPivHouseholderQR(Index rows, Index cols)
      : m_qr(rows, cols),
        m_hCoeffs((std::min)(rows,cols)),
        m_colsPermutation(PermIndexType(cols)),
        m_colsTranspositions(cols),
        m_temp(cols),
        m_colNormsUpdated(cols),
        m_colNormsDirect(cols),
        m_isInitialized(false),
        m_usePrescribedThreshold(false) {}

    template<typename InputType>
    explicit ColPivHouseholderQR(const EigenBase<InputType>& matrix)
      : m_qr(matrix.rows(), matrix.cols()),
        m_hCoeffs((std::min)(matrix.rows(),matrix.cols())),
        m_colsPermutation(PermIndexType(matrix.cols())),
        m_colsTranspositions(matrix.cols()),
        m_temp(matrix.cols()),
        m_colNormsUpdated(matrix.cols()),
        m_colNormsDirect(matrix.cols()),
        m_isInitialized(false),
        m_usePrescribedThreshold(false)
    {
      compute(matrix.derived());
    }

    template<typename InputType>
    explicit ColPivHouseholderQR(EigenBase<InputType>& matrix)
      : m_qr(matrix.derived()),
        m_hCoeffs((std::min)(matrix.rows(),matrix.cols())),
        m_colsPermutation(PermIndexType(matrix.cols())),
        m_colsTranspositions(matrix.cols()),
        m_temp(matrix.cols()),
        m_colNormsUpdated(matrix.cols()),
        m_colNormsDirect(matrix.cols()),
        m_isInitialized(false),
        m_usePrescribedThreshold(false)
    {
      computeInPlace();
    }

    template<typename Rhs>
    inline const Solve<ColPivHouseholderQR, Rhs>
    solve(const MatrixBase<Rhs>& b) const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return Solve<ColPivHouseholderQR, Rhs>(*this, b.derived());
    }

    HouseholderSequenceType householderQ() const;
    HouseholderSequenceType matrixQ() const
    {
      return householderQ();
    }

    const MatrixType& matrixQR() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return m_qr;
    }

    const MatrixType& matrixR() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return m_qr;
    }

    template<typename InputType>
    ColPivHouseholderQR& compute(const EigenBase<InputType>& matrix);

    const PermutationType& colsPermutation() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return m_colsPermutation;
    }

    typename MatrixType::RealScalar absDeterminant() const;

    typename MatrixType::RealScalar logAbsDeterminant() const;

    inline Index rank() const
    {
      using std::abs;
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      RealScalar premultiplied_threshold = abs(m_maxpivot) * threshold();
      Index result = 0;
      for(Index i = 0; i < m_nonzero_pivots; ++i)
        result += (abs(m_qr.coeff(i,i)) > premultiplied_threshold);
      return result;
    }

    inline Index dimensionOfKernel() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return cols() - rank();
    }

    inline bool isInjective() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return rank() == cols();
    }

    inline bool isSurjective() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return rank() == rows();
    }

    inline bool isInvertible() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return isInjective() && isSurjective();
    }

    inline const Inverse<ColPivHouseholderQR> inverse() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return Inverse<ColPivHouseholderQR>(*this);
    }

    inline Index rows() const { return m_qr.rows(); }
    inline Index cols() const { return m_qr.cols(); }

    const HCoeffsType& hCoeffs() const { return m_hCoeffs; }

    ColPivHouseholderQR& setThreshold(const RealScalar& threshold)
    {
      m_usePrescribedThreshold = true;
      m_prescribedThreshold = threshold;
      return *this;
    }

    ColPivHouseholderQR& setThreshold(Default_t)
    {
      m_usePrescribedThreshold = false;
      return *this;
    }

    RealScalar threshold() const
    {
      eigen_assert(m_isInitialized || m_usePrescribedThreshold);
      return m_usePrescribedThreshold ? m_prescribedThreshold
      // this formula comes from experimenting (see "LU precision tuning" thread on the list)
      // and turns out to be identical to Higham's formula used already in LDLt.
                                      : NumTraits<Scalar>::epsilon() * RealScalar(m_qr.diagonalSize());
    }

    inline Index nonzeroPivots() const
    {
      eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
      return m_nonzero_pivots;
    }

    RealScalar maxPivot() const { return m_maxpivot; }

    ComputationInfo info() const
    {
      eigen_assert(m_isInitialized && "Decomposition is not initialized.");
      return Success;
    }

    #ifndef EIGEN_PARSED_BY_DOXYGEN
    template<typename RhsType, typename DstType>
    EIGEN_DEVICE_FUNC
    void _solve_impl(const RhsType &rhs, DstType &dst) const;
    #endif

  protected:

    friend class CompleteOrthogonalDecomposition<MatrixType>;

    static void check_template_parameters()
    {
      EIGEN_STATIC_ASSERT_NON_INTEGER(Scalar);
    }

    void computeInPlace();

    MatrixType m_qr;
    HCoeffsType m_hCoeffs;
    PermutationType m_colsPermutation;
    IntRowVectorType m_colsTranspositions;
    RowVectorType m_temp;
    RealRowVectorType m_colNormsUpdated;
    RealRowVectorType m_colNormsDirect;
    bool m_isInitialized, m_usePrescribedThreshold;
    RealScalar m_prescribedThreshold, m_maxpivot;
    Index m_nonzero_pivots;
    Index m_det_pq;
};

template<typename MatrixType>
typename MatrixType::RealScalar ColPivHouseholderQR<MatrixType>::absDeterminant() const
{
  using std::abs;
  eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
  eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
  return abs(m_qr.diagonal().prod());
}

template<typename MatrixType>
typename MatrixType::RealScalar ColPivHouseholderQR<MatrixType>::logAbsDeterminant() const
{
  eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
  eigen_assert(m_qr.rows() == m_qr.cols() && "You can't take the determinant of a non-square matrix!");
  return m_qr.diagonal().cwiseAbs().array().log().sum();
}

template<typename MatrixType>
template<typename InputType>
ColPivHouseholderQR<MatrixType>& ColPivHouseholderQR<MatrixType>::compute(const EigenBase<InputType>& matrix)
{
  m_qr = matrix.derived();
  computeInPlace();
  return *this;
}

template<typename MatrixType>
void ColPivHouseholderQR<MatrixType>::computeInPlace()
{
  check_template_parameters();

  // the column permutation is stored as int indices, so just to be sure:
  eigen_assert(m_qr.cols()<=NumTraits<int>::highest());

  using std::abs;

  Index rows = m_qr.rows();
  Index cols = m_qr.cols();
  Index size = m_qr.diagonalSize();

  m_hCoeffs.resize(size);

  m_temp.resize(cols);

  m_colsTranspositions.resize(m_qr.cols());
  Index number_of_transpositions = 0;

  m_colNormsUpdated.resize(cols);
  m_colNormsDirect.resize(cols);
  for (Index k = 0; k < cols; ++k) {
    // colNormsDirect(k) caches the most recent directly computed norm of
    // column k.
    m_colNormsDirect.coeffRef(k) = m_qr.col(k).norm();
    m_colNormsUpdated.coeffRef(k) = m_colNormsDirect.coeffRef(k);
  }

  RealScalar threshold_helper =  numext::abs2<Scalar>(m_colNormsUpdated.maxCoeff() * NumTraits<Scalar>::epsilon()) / RealScalar(rows);
  RealScalar norm_downdate_threshold = numext::sqrt(NumTraits<Scalar>::epsilon());

  m_nonzero_pivots = size; // the generic case is that in which all pivots are nonzero (invertible case)
  m_maxpivot = RealScalar(0);

  for(Index k = 0; k < size; ++k)
  {
    // first, we look up in our table m_colNormsUpdated which column has the biggest norm
    Index biggest_col_index;
    RealScalar biggest_col_sq_norm = numext::abs2(m_colNormsUpdated.tail(cols-k).maxCoeff(&biggest_col_index));
    biggest_col_index += k;

    // Track the number of meaningful pivots but do not stop the decomposition to make
    // sure that the initial matrix is properly reproduced. See bug 941.
    if(m_nonzero_pivots==size && biggest_col_sq_norm < threshold_helper * RealScalar(rows-k))
      m_nonzero_pivots = k;

    // apply the transposition to the columns
    m_colsTranspositions.coeffRef(k) = biggest_col_index;
    if(k != biggest_col_index) {
      m_qr.col(k).swap(m_qr.col(biggest_col_index));
      std::swap(m_colNormsUpdated.coeffRef(k), m_colNormsUpdated.coeffRef(biggest_col_index));
      std::swap(m_colNormsDirect.coeffRef(k), m_colNormsDirect.coeffRef(biggest_col_index));
      ++number_of_transpositions;
    }

    // generate the householder vector, store it below the diagonal
    RealScalar beta;
    m_qr.col(k).tail(rows-k).makeHouseholderInPlace(m_hCoeffs.coeffRef(k), beta);

    // apply the householder transformation to the diagonal coefficient
    m_qr.coeffRef(k,k) = beta;

    // remember the maximum absolute value of diagonal coefficients
    if(abs(beta) > m_maxpivot) m_maxpivot = abs(beta);

    // apply the householder transformation
    m_qr.bottomRightCorner(rows-k, cols-k-1)
        .applyHouseholderOnTheLeft(m_qr.col(k).tail(rows-k-1), m_hCoeffs.coeffRef(k), &m_temp.coeffRef(k+1));

    // update our table of norms of the columns
    for (Index j = k + 1; j < cols; ++j) {
      // The following implements the stable norm downgrade step discussed in
      // http://www.netlib.org/lapack/lawnspdf/lawn176.pdf
      // and used in LAPACK routines xGEQPF and xGEQP3.
      // See lines 278-297 in http://www.netlib.org/lapack/explore-html/dc/df4/sgeqpf_8f_source.html
      if (m_colNormsUpdated.coeffRef(j) != 0) {
        RealScalar temp = abs(m_qr.coeffRef(k, j)) / m_colNormsUpdated.coeffRef(j);
        temp = (RealScalar(1) + temp) * (RealScalar(1) - temp);
        temp = temp < 0 ? 0 : temp;
        RealScalar temp2 = temp * numext::abs2<Scalar>(m_colNormsUpdated.coeffRef(j) /
                                                       m_colNormsDirect.coeffRef(j));
        if (temp2 <= norm_downdate_threshold) {
          // The updated norm has become too inaccurate so re-compute the column
          // norm directly.
          m_colNormsDirect.coeffRef(j) = m_qr.col(j).tail(rows - k - 1).norm();
          m_colNormsUpdated.coeffRef(j) = m_colNormsDirect.coeffRef(j);
        } else {
          m_colNormsUpdated.coeffRef(j) *= numext::sqrt(temp);
        }
      }
    }
  }

  m_colsPermutation.setIdentity(PermIndexType(cols));
  for(PermIndexType k = 0; k < size/*m_nonzero_pivots*/; ++k)
    m_colsPermutation.applyTranspositionOnTheRight(k, PermIndexType(m_colsTranspositions.coeff(k)));

  m_det_pq = (number_of_transpositions%2) ? -1 : 1;
  m_isInitialized = true;
}

#ifndef EIGEN_PARSED_BY_DOXYGEN
template<typename _MatrixType>
template<typename RhsType, typename DstType>
void ColPivHouseholderQR<_MatrixType>::_solve_impl(const RhsType &rhs, DstType &dst) const
{
  eigen_assert(rhs.rows() == rows());

  const Index nonzero_pivots = nonzeroPivots();

  if(nonzero_pivots == 0)
  {
    dst.setZero();
    return;
  }

  typename RhsType::PlainObject c(rhs);

  // Note that the matrix Q = H_0^* H_1^*... so its inverse is Q^* = (H_0 H_1 ...)^T
  c.applyOnTheLeft(householderSequence(m_qr, m_hCoeffs)
                    .setLength(nonzero_pivots)
                    .transpose()
    );

  m_qr.topLeftCorner(nonzero_pivots, nonzero_pivots)
      .template triangularView<Upper>()
      .solveInPlace(c.topRows(nonzero_pivots));

  for(Index i = 0; i < nonzero_pivots; ++i) dst.row(m_colsPermutation.indices().coeff(i)) = c.row(i);
  for(Index i = nonzero_pivots; i < cols(); ++i) dst.row(m_colsPermutation.indices().coeff(i)).setZero();
}
#endif

namespace internal {

template<typename DstXprType, typename MatrixType>
struct Assignment<DstXprType, Inverse<ColPivHouseholderQR<MatrixType> >, internal::assign_op<typename DstXprType::Scalar,typename ColPivHouseholderQR<MatrixType>::Scalar>, Dense2Dense>
{
  typedef ColPivHouseholderQR<MatrixType> QrType;
  typedef Inverse<QrType> SrcXprType;
  static void run(DstXprType &dst, const SrcXprType &src, const internal::assign_op<typename DstXprType::Scalar,typename QrType::Scalar> &)
  {
    dst = src.nestedExpression().solve(MatrixType::Identity(src.rows(), src.cols()));
  }
};

} // end namespace internal

template<typename MatrixType>
typename ColPivHouseholderQR<MatrixType>::HouseholderSequenceType ColPivHouseholderQR<MatrixType>
  ::householderQ() const
{
  eigen_assert(m_isInitialized && "ColPivHouseholderQR is not initialized.");
  return HouseholderSequenceType(m_qr, m_hCoeffs.conjugate());
}

template<typename Derived>
const ColPivHouseholderQR<typename MatrixBase<Derived>::PlainObject>
MatrixBase<Derived>::colPivHouseholderQr() const
{
  return ColPivHouseholderQR<PlainObject>(eval());
}

} // end namespace Eigen

#endif // EIGEN_COLPIVOTINGHOUSEHOLDERQR_H