#include <GKlib.h>

Include dependency graph for seq.c:

Functions
gk_i2cc2i_t *	gk_i2cc2i_create_common (char *alphabet)
	This function creates the localizations for the various sequences. More...

void	gk_seq_free (gk_seq_t *seq)
	This function frees the memory allocated to the seq structure. More...

void	gk_seq_init (gk_seq_t *seq)

gk_seq_t *	gk_seq_ReadGKMODPSSM (char *filename)
	This function reads a pssm in the format of gkmod pssm. More...

Function Documentation

gk_i2cc2i_t* gk_i2cc2i_create_common ( char * alphabet )

This function creates the localizations for the various sequences.

Parameters

string i.e amino acids, nucleotides, sequences

Definition at line 48 of file seq.c.

void gk_seq_free ( gk_seq_t * seq )

This function frees the memory allocated to the seq structure.

Parameters

gk_seq_t

Definition at line 166 of file seq.c.

void gk_seq_init ( gk_seq_t * seq )

Definition at line 27 of file seq.c.

gk_seq_t* gk_seq_ReadGKMODPSSM ( char * filename )

This function reads a pssm in the format of gkmod pssm.

Parameters

file_name is the name of the pssm file

Definition at line 83 of file seq.c.

Functions